Hb_000505_150

Information

Type -
Description -
Location Contig505: 228640-233269
Sequence    

Annotation

kegg
ID rcu:RCOM_0003510
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012081166.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
swissprot
ID Q9LEW0
description Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1
trembl
ID A0A067K5F6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_17010 PE=3 SV=1
Gene Ontology
ID GO:0008270
description ubiquitin carboxyl-terminal hydrolase 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46023: 228534-228779 , PASA_asmbl_46024: 228961-233099 , PASA_asmbl_46025: 229455-233099 , PASA_asmbl_46026: 230885-233099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_150 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
2 Hb_000252_100 0.0766337634 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
3 Hb_000140_380 0.0799626608 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
4 Hb_010344_050 0.0817669648 - - Adagio 1 -like protein [Gossypium arboreum]
5 Hb_007386_040 0.0821409319 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
6 Hb_000853_200 0.0836513733 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
7 Hb_001898_080 0.0838343438 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
8 Hb_000012_310 0.0863716389 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
9 Hb_000152_320 0.0899729871 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007044_050 0.0933931608 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
11 Hb_000454_090 0.0945367687 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
12 Hb_007416_090 0.0966198182 - - UDP-sugar transporter, putative [Ricinus communis]
13 Hb_001789_150 0.0978344382 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
14 Hb_000406_140 0.1031975115 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000173_410 0.1045887048 - - PREDICTED: BI1-like protein [Jatropha curcas]
16 Hb_000110_140 0.1048634982 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
17 Hb_000212_450 0.1056756954 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
18 Hb_000787_020 0.1062745063 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_011861_100 0.1064429164 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000109_180 0.1081213076 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000505_150 Hb_000505_150 Hb_000252_100 Hb_000252_100 Hb_000505_150--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_007386_040 Hb_007386_040 Hb_000505_150--Hb_007386_040 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_004078_040 Hb_004078_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000140_380--Hb_000454_090 Hb_000497_300 Hb_000497_300 Hb_010344_050--Hb_000497_300 Hb_004712_130 Hb_004712_130 Hb_010344_050--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_010344_050--Hb_007386_040 Hb_007386_040--Hb_000252_100 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180 Hb_000477_100 Hb_000477_100 Hb_000853_200--Hb_000477_100 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000748_030 Hb_000748_030 Hb_000853_200--Hb_000748_030 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_007416_090 Hb_007416_090 Hb_001898_080--Hb_007416_090 Hb_001789_150 Hb_001789_150 Hb_001898_080--Hb_001789_150 Hb_000406_140 Hb_000406_140 Hb_001898_080--Hb_000406_140 Hb_003847_030 Hb_003847_030 Hb_001898_080--Hb_003847_030 Hb_001898_080--Hb_000787_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85136 4.34657 2.80089 9.05696 1.94653 2.54706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47271 4.651 8.63097 5.98989 5.48668

CAGE analysis