Hb_000506_070

Information

Type -
Description -
Location Contig506: 109480-113783
Sequence    

Annotation

kegg
ID tcc:TCM_042984
description Ribosomal L29 family protein
nr
ID XP_012073343.1
description PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
swissprot
ID Q9M5L0
description 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
trembl
ID A0A067LFS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06629 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46109: 109482-111400 , PASA_asmbl_46110: 109553-113828
cDNA
(Sanger)
(ID:Location)		 004_I05.ab1: 109565-111400 , 019_H05.ab1: 109566-111400 , 020_L21.ab1: 109649-111400 , 040_K24.ab1: 109564-111400 , 052_F08.ab1: 109563-111400

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_070 0.0 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
2 Hb_000735_040 0.0568456542 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_000062_650 0.0592779238 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
4 Hb_003018_020 0.0622894265 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
5 Hb_003226_100 0.0649509489 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
6 Hb_001141_140 0.0657931222 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
7 Hb_001863_430 0.0675629794 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
8 Hb_009476_020 0.0677147624 - - tryptophan biosynthesis protein, putative [Ricinus communis]
9 Hb_174865_010 0.0709186098 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
10 Hb_004157_030 0.0720248818 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_001016_150 0.0738925325 - - Rop1 [Hevea brasiliensis]
12 Hb_008921_020 0.074953285 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_007044_130 0.077914613 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
14 Hb_000035_370 0.081896276 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001476_080 0.0861949358 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
16 Hb_000152_420 0.0865534194 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
17 Hb_000676_160 0.0883865403 - - folate carrier protein, putative [Ricinus communis]
18 Hb_124953_020 0.0887262626 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
19 Hb_091433_020 0.0905252982 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
20 Hb_000260_550 0.0911934735 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000506_070 Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_003018_020 Hb_003018_020 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_003018_020--Hb_174865_010 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_003226_100--Hb_004157_030 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_001141_140--Hb_003226_100 Hb_001141_140--Hb_007044_130 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.5686 48.7317 88.9917 88.1657 54.8394 79.8451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.711 309.703 74.8574 78.4063 41.5631

CAGE analysis