Hb_000506_100

Information

Type -
Description -
Location Contig506: 120948-123258
Sequence    

Annotation

kegg
ID rcu:RCOM_1120270
description protein binding protein, putative
nr
ID XP_012081421.1
description PREDICTED: BTB/POZ domain-containing protein At5g48130 [Jatropha curcas]
swissprot
ID Q9LUB9
description BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130 PE=2 SV=1
trembl
ID B9T6J7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1120270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_100 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g48130 [Jatropha curcas]
2 Hb_002874_120 0.1422426935 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
3 Hb_001386_100 0.1709525618 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor PHERES 1-like [Jatropha curcas]
4 Hb_000343_020 0.1856573401 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
5 Hb_001536_020 0.1895884953 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
6 Hb_007101_270 0.1931811754 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
7 Hb_005834_050 0.19711184 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
8 Hb_010683_070 0.2014968622 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
9 Hb_001235_160 0.2030205196 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007951_020 0.2052395629 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
11 Hb_004607_020 0.2063651389 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_012691_010 0.2073118986 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
13 Hb_000035_150 0.2094642927 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
14 Hb_000343_010 0.2097542367 - - F3F9.11 [Arabidopsis thaliana]
15 Hb_011849_030 0.2132978555 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007643_060 0.2133837256 - - -
17 Hb_004316_080 0.215645406 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
18 Hb_002995_010 0.2162580409 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
19 Hb_006615_220 0.2170469977 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
20 Hb_001649_050 0.2177483893 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000506_100 Hb_000506_100 Hb_002874_120 Hb_002874_120 Hb_000506_100--Hb_002874_120 Hb_001386_100 Hb_001386_100 Hb_000506_100--Hb_001386_100 Hb_000343_020 Hb_000343_020 Hb_000506_100--Hb_000343_020 Hb_001536_020 Hb_001536_020 Hb_000506_100--Hb_001536_020 Hb_007101_270 Hb_007101_270 Hb_000506_100--Hb_007101_270 Hb_005834_050 Hb_005834_050 Hb_000506_100--Hb_005834_050 Hb_002874_120--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_002874_120--Hb_011849_030 Hb_002918_220 Hb_002918_220 Hb_002874_120--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_002874_120--Hb_005568_140 Hb_027337_010 Hb_027337_010 Hb_002874_120--Hb_027337_010 Hb_000200_270 Hb_000200_270 Hb_002874_120--Hb_000200_270 Hb_001235_160 Hb_001235_160 Hb_001386_100--Hb_001235_160 Hb_000809_140 Hb_000809_140 Hb_001386_100--Hb_000809_140 Hb_001386_100--Hb_000343_020 Hb_001386_100--Hb_002874_120 Hb_008250_020 Hb_008250_020 Hb_001386_100--Hb_008250_020 Hb_009339_040 Hb_009339_040 Hb_000343_020--Hb_009339_040 Hb_002081_060 Hb_002081_060 Hb_000343_020--Hb_002081_060 Hb_004607_020 Hb_004607_020 Hb_000343_020--Hb_004607_020 Hb_000343_020--Hb_011849_030 Hb_033152_060 Hb_033152_060 Hb_000343_020--Hb_033152_060 Hb_000042_390 Hb_000042_390 Hb_001536_020--Hb_000042_390 Hb_001347_030 Hb_001347_030 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_012653_010 Hb_012653_010 Hb_001536_020--Hb_012653_010 Hb_173029_030 Hb_173029_030 Hb_001536_020--Hb_173029_030 Hb_005050_050 Hb_005050_050 Hb_007101_270--Hb_005050_050 Hb_003020_070 Hb_003020_070 Hb_007101_270--Hb_003020_070 Hb_002890_160 Hb_002890_160 Hb_007101_270--Hb_002890_160 Hb_010683_070 Hb_010683_070 Hb_007101_270--Hb_010683_070 Hb_006789_030 Hb_006789_030 Hb_007101_270--Hb_006789_030 Hb_005486_020 Hb_005486_020 Hb_007101_270--Hb_005486_020 Hb_002995_010 Hb_002995_010 Hb_005834_050--Hb_002995_010 Hb_012691_010 Hb_012691_010 Hb_005834_050--Hb_012691_010 Hb_001776_130 Hb_001776_130 Hb_005834_050--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0365586 0.0389887 0.271943 0.0495206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0559233 0.037147

CAGE analysis