Hb_000506_120

Information

Type -
Description -
Location Contig506: 144167-146939
Sequence    

Annotation

kegg
ID -
description -
nr
ID KFK31749.1
description hypothetical protein AALP_AA6G154200 [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A087GPE7
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G154200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_120 0.0 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
2 Hb_020400_050 0.1030844967 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
3 Hb_002851_020 0.1038900076 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
4 Hb_000987_120 0.1081941936 - - PREDICTED: protein SIEL [Jatropha curcas]
5 Hb_000318_100 0.114053835 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
6 Hb_008699_020 0.114816361 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
7 Hb_000030_290 0.1179202564 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
8 Hb_005736_060 0.119544351 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
9 Hb_000446_030 0.1224174993 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_000368_010 0.1231153524 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
11 Hb_000135_060 0.1254494421 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
12 Hb_005211_190 0.1267125968 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
13 Hb_001824_010 0.1283683783 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_009711_020 0.1291128541 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
15 Hb_000483_250 0.1307510159 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
16 Hb_153544_010 0.1315103773 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
17 Hb_000207_400 0.1345893466 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
18 Hb_002609_210 0.1362664262 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
19 Hb_021056_020 0.1363789959 - - plasma membrane H+-ATPase [Hevea brasiliensis]
20 Hb_004871_020 0.1373505729 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000506_120 Hb_000506_120 Hb_020400_050 Hb_020400_050 Hb_000506_120--Hb_020400_050 Hb_002851_020 Hb_002851_020 Hb_000506_120--Hb_002851_020 Hb_000987_120 Hb_000987_120 Hb_000506_120--Hb_000987_120 Hb_000318_100 Hb_000318_100 Hb_000506_120--Hb_000318_100 Hb_008699_020 Hb_008699_020 Hb_000506_120--Hb_008699_020 Hb_000030_290 Hb_000030_290 Hb_000506_120--Hb_000030_290 Hb_000125_190 Hb_000125_190 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_020400_050--Hb_000025_120 Hb_002061_040 Hb_002061_040 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_000368_010 Hb_000368_010 Hb_002851_020--Hb_000368_010 Hb_002851_020--Hb_002061_040 Hb_011173_050 Hb_011173_050 Hb_002851_020--Hb_011173_050 Hb_002676_090 Hb_002676_090 Hb_002851_020--Hb_002676_090 Hb_005736_060 Hb_005736_060 Hb_002851_020--Hb_005736_060 Hb_002851_020--Hb_020400_050 Hb_174865_030 Hb_174865_030 Hb_000987_120--Hb_174865_030 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_001722_100 Hb_001722_100 Hb_000987_120--Hb_001722_100 Hb_000522_080 Hb_000522_080 Hb_000987_120--Hb_000522_080 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_000590_100 Hb_000590_100 Hb_000318_100--Hb_000590_100 Hb_000318_100--Hb_020400_050 Hb_001824_010 Hb_001824_010 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_000318_100--Hb_008699_020 Hb_008699_020--Hb_001824_010 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_009711_020 Hb_009711_020 Hb_000030_290--Hb_009711_020 Hb_001616_040 Hb_001616_040 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000334_210 Hb_000334_210 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_002609_210 Hb_002609_210 Hb_000030_290--Hb_002609_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146231 0.190793 0.0779893 0.200803 0.213832 0.140106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.782515 0.561375 0.240265 0.266612 0.153002

CAGE analysis