Hb_000509_090

Information

Type -
Description -
Location Contig509: 195934-197523
Sequence    

Annotation

kegg
ID rcu:RCOM_0770830
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002529891.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID B9SV72
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_0770830 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46220: 196814-197324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000509_090 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_001989_040 0.0463323939 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
3 Hb_000111_120 0.0768869415 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_004631_100 0.1178895268 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
5 Hb_010164_020 0.1194558503 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
6 Hb_133508_020 0.1342749981 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
7 Hb_002774_180 0.1369132403 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_000631_100 0.1370297032 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
9 Hb_002871_050 0.1380042258 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
10 Hb_001776_070 0.1404023223 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
11 Hb_055147_020 0.1407683553 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
12 Hb_000411_020 0.1413506777 - - cytochrome P450, putative [Ricinus communis]
13 Hb_008806_040 0.1423492685 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_004785_160 0.1453002848 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
15 Hb_096878_010 0.1489831029 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
16 Hb_003050_170 0.1491649713 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006916_120 0.1507505047 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
18 Hb_185830_090 0.1514179503 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003878_020 0.151481059 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
20 Hb_013358_030 0.1516400549 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000509_090 Hb_000509_090 Hb_001989_040 Hb_001989_040 Hb_000509_090--Hb_001989_040 Hb_000111_120 Hb_000111_120 Hb_000509_090--Hb_000111_120 Hb_004631_100 Hb_004631_100 Hb_000509_090--Hb_004631_100 Hb_010164_020 Hb_010164_020 Hb_000509_090--Hb_010164_020 Hb_133508_020 Hb_133508_020 Hb_000509_090--Hb_133508_020 Hb_002774_180 Hb_002774_180 Hb_000509_090--Hb_002774_180 Hb_001989_040--Hb_000111_120 Hb_008806_040 Hb_008806_040 Hb_001989_040--Hb_008806_040 Hb_001989_040--Hb_002774_180 Hb_001989_040--Hb_010164_020 Hb_001989_040--Hb_004631_100 Hb_000111_120--Hb_004631_100 Hb_000111_120--Hb_010164_020 Hb_000631_100 Hb_000631_100 Hb_000111_120--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_000111_120--Hb_001776_070 Hb_002676_110 Hb_002676_110 Hb_004631_100--Hb_002676_110 Hb_033053_020 Hb_033053_020 Hb_004631_100--Hb_033053_020 Hb_000060_080 Hb_000060_080 Hb_004631_100--Hb_000060_080 Hb_002888_100 Hb_002888_100 Hb_004631_100--Hb_002888_100 Hb_004659_100 Hb_004659_100 Hb_004631_100--Hb_004659_100 Hb_010164_020--Hb_001776_070 Hb_000479_230 Hb_000479_230 Hb_010164_020--Hb_000479_230 Hb_002871_050 Hb_002871_050 Hb_010164_020--Hb_002871_050 Hb_011129_020 Hb_011129_020 Hb_010164_020--Hb_011129_020 Hb_006916_120 Hb_006916_120 Hb_133508_020--Hb_006916_120 Hb_000152_590 Hb_000152_590 Hb_133508_020--Hb_000152_590 Hb_000975_090 Hb_000975_090 Hb_133508_020--Hb_000975_090 Hb_185830_090 Hb_185830_090 Hb_133508_020--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010 Hb_096878_010 Hb_096878_010 Hb_133508_020--Hb_096878_010 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_009476_070 Hb_009476_070 Hb_002774_180--Hb_009476_070 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.966794 1.6638 1.66914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.04497 0.0963854

CAGE analysis