Hb_000510_030

Information

Type -
Description -
Location Contig510: 30005-31366
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_481979
description hypothetical protein
nr
ID XP_007050394.1
description Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
swissprot
ID P37218
description Histone H1 OS=Solanum lycopersicum PE=3 SV=1
trembl
ID A0A061DR21
description Winged-helix DNA-binding transcription factor family protein OS=Theobroma cacao GN=TCM_004181 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46262: 30007-31315
cDNA
(Sanger)
(ID:Location)		 004_L13.ab1: 30434-31309 , 004_N09.ab1: 30394-31309 , 012_E05.ab1: 30482-31309 , 015_I13.ab1: 30519-31309 , 019_G13.ab1: 30752-31315 , 026_I02.ab1: 30598-31306 , 028_M20.ab1: 30527-31315 , 031_L22.ab1: 30519-31309 , 032_A15.ab1: 30522-31309 , 043_A01.ab1: 30445-31315 , 045_J21.ab1: 30421-31315 , 052_D21.ab1: 30506-31309 , 053_J10.ab1: 30532-31309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_030 0.0 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
2 Hb_004317_030 0.0766768749 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
3 Hb_000392_550 0.0779699294 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001369_790 0.0899184207 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
5 Hb_001711_120 0.0905123744 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
6 Hb_000032_370 0.0935936192 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
7 Hb_004440_060 0.1009247986 - - aldose 1-epimerase, putative [Ricinus communis]
8 Hb_000317_260 0.1109188964 - - unknown [Populus trichocarpa]
9 Hb_000388_060 0.1134845743 - - fructokinase [Manihot esculenta]
10 Hb_002045_060 0.1143489807 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
11 Hb_001789_200 0.1149155978 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
12 Hb_001301_340 0.1166846906 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
13 Hb_004644_030 0.1176166843 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
14 Hb_000622_290 0.1178221984 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
15 Hb_140627_010 0.1182679708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001124_180 0.1191892612 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
17 Hb_000510_080 0.1207620133 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
18 Hb_005846_030 0.1215658339 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
19 Hb_007192_030 0.1216847809 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
20 Hb_001578_020 0.1230008956 - - Protein virR, putative [Ricinus communis]

Gene co-expression network

sample Hb_000510_030 Hb_000510_030 Hb_004317_030 Hb_004317_030 Hb_000510_030--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000510_030--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_000032_370 Hb_000032_370 Hb_000510_030--Hb_000032_370 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_004317_030--Hb_000032_370 Hb_004317_030--Hb_000392_550 Hb_002045_060 Hb_002045_060 Hb_004317_030--Hb_002045_060 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000392_550--Hb_001369_790 Hb_000392_550--Hb_000032_370 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_002053_010 Hb_002053_010 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_001711_120--Hb_000392_550 Hb_001711_120--Hb_001369_790 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_000032_370--Hb_002045_060 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.0526 29.5454 206.192 147.269 31.144 39.7282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
130.16 213.439 118.025 144.043 308.818

CAGE analysis