Hb_000510_090

Information

Type -
Description -
Location Contig510: 100828-103660
Sequence    

Annotation

kegg
ID pxb:103938165
description 40S ribosomal protein S15-4-like
nr
ID XP_010102279.1
description 40S ribosomal protein S15 [Morus notabilis]
swissprot
ID Q945U1
description 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1
trembl
ID W9RI49
description 40S ribosomal protein S15 OS=Morus notabilis GN=L484_024561 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s15-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46270: 100900-103900
cDNA
(Sanger)
(ID:Location)		 026_G10.ab1: 100909-103337 , 027_K08.ab1: 100905-103560 , 033_P09.ab1: 100900-103535 , 039_H23.ab1: 100891-103439 , 047_D11.ab1: 100905-103488 , 051_C20.ab1: 100900-103532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_090 0.0 - - 40S ribosomal protein S15 [Morus notabilis]
2 Hb_143813_010 0.0710044107 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
3 Hb_004724_100 0.0802393178 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
4 Hb_034585_030 0.0809104026 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
5 Hb_155375_010 0.0864073215 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
6 Hb_003777_270 0.0875963068 - - 60S ribosomal protein L3B [Hevea brasiliensis]
7 Hb_141131_010 0.0904882126 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
8 Hb_000442_160 0.0910364597 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
9 Hb_001246_100 0.0916668428 - - Ras-related small GTP-binding family protein [Theobroma cacao]
10 Hb_000103_140 0.0937822233 - - ribosomal protein S3a [Populus trichocarpa]
11 Hb_000175_070 0.0949220605 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
12 Hb_133271_020 0.095821876 - - prohibitin, putative [Ricinus communis]
13 Hb_001124_210 0.0959174002 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000620_080 0.096866534 - - hypothetical protein F775_32679 [Aegilops tauschii]
15 Hb_001454_140 0.0973526603 - - protein arginine n-methyltransferase, putative [Ricinus communis]
16 Hb_009543_030 0.0983936657 - - prefoldin subunit 1 [Jatropha curcas]
17 Hb_000099_240 0.0987549986 - - 60S ribosomal protein L7a, putative [Ricinus communis]
18 Hb_000749_150 0.1002204392 - - -
19 Hb_001221_230 0.1014153377 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000347_340 0.1022982152 - - ring finger, putative [Ricinus communis]

Gene co-expression network

sample Hb_000510_090 Hb_000510_090 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_007747_090 Hb_007747_090 Hb_143813_010--Hb_007747_090 Hb_001246_100 Hb_001246_100 Hb_143813_010--Hb_001246_100 Hb_003120_060 Hb_003120_060 Hb_143813_010--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230 Hb_003874_020 Hb_003874_020 Hb_004724_100--Hb_003874_020 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_000175_070 Hb_000175_070 Hb_004724_100--Hb_000175_070 Hb_024650_050 Hb_024650_050 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_007166_050 Hb_007166_050 Hb_034585_030--Hb_007166_050 Hb_134226_010 Hb_134226_010 Hb_034585_030--Hb_134226_010 Hb_003086_110 Hb_003086_110 Hb_034585_030--Hb_003086_110 Hb_000442_160 Hb_000442_160 Hb_034585_030--Hb_000442_160 Hb_133271_020 Hb_133271_020 Hb_034585_030--Hb_133271_020 Hb_001976_050 Hb_001976_050 Hb_155375_010--Hb_001976_050 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_004223_090 Hb_004223_090 Hb_003777_270--Hb_004223_090 Hb_033642_010 Hb_033642_010 Hb_003777_270--Hb_033642_010 Hb_000099_240 Hb_000099_240 Hb_003777_270--Hb_000099_240 Hb_009111_050 Hb_009111_050 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_003777_270--Hb_133271_020 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_141131_010--Hb_002217_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
237.873 76.5804 42.9865 93.6051 180.013 427.093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.83 285.734 149.247 113.994 20.7568

CAGE analysis