Hb_000510_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig510: 106827-109775
Sequence    

Annotation

kegg
ID rcu:RCOM_0992280
description WRKY transcription factor, putative
nr
ID XP_002520995.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04336
description Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1
trembl
ID B9S4T8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0992280 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46272: 106982-109775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_100 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_019516_040 0.118207422 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
3 Hb_000184_040 0.1279075818 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
4 Hb_000762_020 0.1294477426 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
5 Hb_000282_060 0.1323589681 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
6 Hb_004072_010 0.1337558289 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
7 Hb_000567_200 0.1349851078 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
8 Hb_004242_100 0.1350922982 - - RNA binding protein, putative [Ricinus communis]
9 Hb_001047_010 0.1362203641 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006831_010 0.1377238214 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_000997_260 0.1389449223 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
12 Hb_004070_030 0.143033739 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_003226_150 0.1443205122 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
14 Hb_000957_040 0.1462846532 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
15 Hb_001141_080 0.1470215792 - - PREDICTED: protein RDM1 [Jatropha curcas]
16 Hb_005245_090 0.1474700733 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
17 Hb_006816_360 0.1480159305 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
18 Hb_001999_120 0.1485143637 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
19 Hb_017434_090 0.1486311475 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002263_010 0.1495693286 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]

Gene co-expression network

sample Hb_000510_100 Hb_000510_100 Hb_019516_040 Hb_019516_040 Hb_000510_100--Hb_019516_040 Hb_000184_040 Hb_000184_040 Hb_000510_100--Hb_000184_040 Hb_000762_020 Hb_000762_020 Hb_000510_100--Hb_000762_020 Hb_000282_060 Hb_000282_060 Hb_000510_100--Hb_000282_060 Hb_004072_010 Hb_004072_010 Hb_000510_100--Hb_004072_010 Hb_000567_200 Hb_000567_200 Hb_000510_100--Hb_000567_200 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_000762_020--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_000732_260 Hb_000732_260 Hb_000282_060--Hb_000732_260 Hb_033491_010 Hb_033491_010 Hb_000282_060--Hb_033491_010 Hb_006569_020 Hb_006569_020 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000784_090 Hb_000784_090 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_004242_100 Hb_004242_100 Hb_004072_010--Hb_004242_100 Hb_000700_090 Hb_000700_090 Hb_004072_010--Hb_000700_090 Hb_006816_360 Hb_006816_360 Hb_004072_010--Hb_006816_360 Hb_005245_090 Hb_005245_090 Hb_004072_010--Hb_005245_090 Hb_098709_010 Hb_098709_010 Hb_004072_010--Hb_098709_010 Hb_005941_010 Hb_005941_010 Hb_004072_010--Hb_005941_010 Hb_003428_110 Hb_003428_110 Hb_000567_200--Hb_003428_110 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_002924_050 Hb_002924_050 Hb_000567_200--Hb_002924_050 Hb_006499_010 Hb_006499_010 Hb_000567_200--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000567_200--Hb_001930_070 Hb_001518_020 Hb_001518_020 Hb_000567_200--Hb_001518_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.947 36.6425 4.0503 8.69438 76.2992 161.852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
240.213 83.2429 91.2688 31.2732 2.02505

CAGE analysis