Hb_000510_130

Information

Type -
Description -
Location Contig510: 129522-130858
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24060g
description POPTRDRAFT_651854; hypothetical protein
nr
ID XP_012092095.1
description PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
swissprot
ID Q9C889
description PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
trembl
ID A0A067JC27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21828 PE=4 SV=1
Gene Ontology
ID GO:0012505
description pra1 family protein f2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46277: 129234-129464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_130 0.0 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
2 Hb_020956_020 0.0372098595 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
3 Hb_010504_020 0.0489372582 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_005305_080 0.0537993537 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
5 Hb_003092_040 0.0547681618 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
6 Hb_004223_280 0.0656336549 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
7 Hb_000953_020 0.06607798 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
8 Hb_007416_280 0.0680974268 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001226_160 0.0681625207 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
10 Hb_000613_140 0.0682075893 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_000398_180 0.068988292 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
12 Hb_096563_010 0.0718654234 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
13 Hb_002026_180 0.0734961222 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
14 Hb_011689_080 0.0738147719 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
15 Hb_003057_100 0.0741867419 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
16 Hb_002078_150 0.0742421013 - - protein with unknown function [Ricinus communis]
17 Hb_000656_400 0.0745121778 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
18 Hb_001377_290 0.0748298966 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
19 Hb_007590_050 0.075964518 - - NudC domain-containing protein, putative [Ricinus communis]
20 Hb_005686_060 0.0761637548 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]

Gene co-expression network

sample Hb_000510_130 Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_000510_130--Hb_020956_020 Hb_010504_020 Hb_010504_020 Hb_000510_130--Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_020956_020--Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000953_020--Hb_007416_280 Hb_002026_180 Hb_002026_180 Hb_000953_020--Hb_002026_180 Hb_000571_120 Hb_000571_120 Hb_000953_020--Hb_000571_120 Hb_004032_150 Hb_004032_150 Hb_000953_020--Hb_004032_150 Hb_000953_020--Hb_020956_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6039 9.15203 5.4689 8.39475 10.377 15.9375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3347 17.6325 13.7475 7.77327 4.41019

CAGE analysis