Hb_000510_140

Information

Type -
Description -
Location Contig510: 132919-140490
Sequence    

Annotation

kegg
ID tcc:TCM_004200
description DREB2A-interacting protein 2 isoform 1
nr
ID XP_012092096.1
description PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
swissprot
ID Q94AY3
description E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1
trembl
ID A0A067JF16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21829 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase drip2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46280: 132942-139570 , PASA_asmbl_46281: 133475-140025 , PASA_asmbl_46282: 138748-139157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_140 0.0 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
2 Hb_003376_120 0.0931330488 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
3 Hb_000627_120 0.101808547 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
4 Hb_001396_180 0.1094833093 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
5 Hb_003408_030 0.1185157501 - - PREDICTED: protein YIF1B [Jatropha curcas]
6 Hb_000505_010 0.1193846676 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
7 Hb_000330_050 0.1200980094 - - Protein yrdA, putative [Ricinus communis]
8 Hb_002973_080 0.1225195385 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
9 Hb_001360_040 0.1232450289 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
10 Hb_001277_330 0.1245062098 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
11 Hb_000431_010 0.1250306447 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
12 Hb_006693_030 0.1258820754 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
13 Hb_178968_110 0.1269588806 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
14 Hb_065500_050 0.12726873 - - lipoate-protein ligase B, putative [Ricinus communis]
15 Hb_001051_100 0.1282718829 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
16 Hb_005357_150 0.1302028838 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000735_130 0.13048202 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003683_160 0.1305880037 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
19 Hb_085781_010 0.1317008899 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
20 Hb_153112_020 0.1320995044 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]

Gene co-expression network

sample Hb_000510_140 Hb_000510_140 Hb_003376_120 Hb_003376_120 Hb_000510_140--Hb_003376_120 Hb_000627_120 Hb_000627_120 Hb_000510_140--Hb_000627_120 Hb_001396_180 Hb_001396_180 Hb_000510_140--Hb_001396_180 Hb_003408_030 Hb_003408_030 Hb_000510_140--Hb_003408_030 Hb_000505_010 Hb_000505_010 Hb_000510_140--Hb_000505_010 Hb_000330_050 Hb_000330_050 Hb_000510_140--Hb_000330_050 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003376_120--Hb_003408_030 Hb_023386_080 Hb_023386_080 Hb_003376_120--Hb_023386_080 Hb_044662_070 Hb_044662_070 Hb_003376_120--Hb_044662_070 Hb_007924_020 Hb_007924_020 Hb_003376_120--Hb_007924_020 Hb_003376_120--Hb_000627_120 Hb_002716_070 Hb_002716_070 Hb_000627_120--Hb_002716_070 Hb_000627_120--Hb_003408_030 Hb_000205_270 Hb_000205_270 Hb_000627_120--Hb_000205_270 Hb_000627_120--Hb_044662_070 Hb_009486_130 Hb_009486_130 Hb_000627_120--Hb_009486_130 Hb_001360_040 Hb_001360_040 Hb_001396_180--Hb_001360_040 Hb_003376_040 Hb_003376_040 Hb_001396_180--Hb_003376_040 Hb_005539_350 Hb_005539_350 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_000096_090 Hb_000096_090 Hb_001396_180--Hb_000096_090 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_003408_030--Hb_007924_020 Hb_000505_010--Hb_001396_180 Hb_011316_040 Hb_011316_040 Hb_000505_010--Hb_011316_040 Hb_000236_070 Hb_000236_070 Hb_000505_010--Hb_000236_070 Hb_000505_010--Hb_003376_040 Hb_000505_010--Hb_000096_090 Hb_116349_100 Hb_116349_100 Hb_000505_010--Hb_116349_100 Hb_000352_110 Hb_000352_110 Hb_000330_050--Hb_000352_110 Hb_002973_080 Hb_002973_080 Hb_000330_050--Hb_002973_080 Hb_001703_030 Hb_001703_030 Hb_000330_050--Hb_001703_030 Hb_132835_010 Hb_132835_010 Hb_000330_050--Hb_132835_010 Hb_031527_100 Hb_031527_100 Hb_000330_050--Hb_031527_100 Hb_007575_040 Hb_007575_040 Hb_000330_050--Hb_007575_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1795 4.25983 14.2297 3.96937 25.0997 21.4664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1423 23.9173 46.6501 6.57945 10.3596

CAGE analysis