Hb_000510_200

Information

Type -
Description -
Location Contig510: 182951-185231
Sequence    

Annotation

kegg
ID rcu:RCOM_0992180
description nucleotide binding protein, putative
nr
ID XP_002520985.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID Q9FMU5
description U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1
trembl
ID B9S4S8
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0992180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46295: 183426-185894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_200 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_000072_150 0.0695074676 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
3 Hb_002893_150 0.0699388889 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_002798_040 0.0864609239 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
5 Hb_000429_120 0.0896879662 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
6 Hb_000100_070 0.0916310923 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
7 Hb_000046_440 0.092548084 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
8 Hb_028487_110 0.0945791998 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
9 Hb_000789_080 0.0949636564 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
10 Hb_000077_090 0.0953677875 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001235_200 0.098129299 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000093_080 0.0994342301 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
13 Hb_000023_190 0.099665171 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
14 Hb_000436_040 0.100206952 - - PREDICTED: transportin-1 [Jatropha curcas]
15 Hb_004452_100 0.1002494322 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
16 Hb_108216_040 0.1009774006 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
17 Hb_000335_010 0.1014337825 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_000977_210 0.1014665989 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
19 Hb_000345_170 0.1016003567 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
20 Hb_002174_060 0.1020333984 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]

Gene co-expression network

sample Hb_000510_200 Hb_000510_200 Hb_000072_150 Hb_000072_150 Hb_000510_200--Hb_000072_150 Hb_002893_150 Hb_002893_150 Hb_000510_200--Hb_002893_150 Hb_002798_040 Hb_002798_040 Hb_000510_200--Hb_002798_040 Hb_000429_120 Hb_000429_120 Hb_000510_200--Hb_000429_120 Hb_000100_070 Hb_000100_070 Hb_000510_200--Hb_000100_070 Hb_000046_440 Hb_000046_440 Hb_000510_200--Hb_000046_440 Hb_000072_150--Hb_002893_150 Hb_001235_200 Hb_001235_200 Hb_000072_150--Hb_001235_200 Hb_028487_110 Hb_028487_110 Hb_000072_150--Hb_028487_110 Hb_001599_030 Hb_001599_030 Hb_000072_150--Hb_001599_030 Hb_002131_020 Hb_002131_020 Hb_000072_150--Hb_002131_020 Hb_000531_090 Hb_000531_090 Hb_002893_150--Hb_000531_090 Hb_000789_080 Hb_000789_080 Hb_002893_150--Hb_000789_080 Hb_002893_150--Hb_001235_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_004452_100 Hb_004452_100 Hb_002798_040--Hb_004452_100 Hb_002798_040--Hb_000100_070 Hb_001366_040 Hb_001366_040 Hb_002798_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_001866_110 Hb_001866_110 Hb_000429_120--Hb_001866_110 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_000429_120--Hb_028487_110 Hb_108216_040 Hb_108216_040 Hb_000100_070--Hb_108216_040 Hb_007590_080 Hb_007590_080 Hb_000100_070--Hb_007590_080 Hb_002400_180 Hb_002400_180 Hb_000100_070--Hb_002400_180 Hb_000640_320 Hb_000640_320 Hb_000100_070--Hb_000640_320 Hb_002007_350 Hb_002007_350 Hb_000100_070--Hb_002007_350 Hb_026099_010 Hb_026099_010 Hb_000046_440--Hb_026099_010 Hb_021409_170 Hb_021409_170 Hb_000046_440--Hb_021409_170 Hb_000046_440--Hb_000789_080 Hb_001221_040 Hb_001221_040 Hb_000046_440--Hb_001221_040 Hb_000567_050 Hb_000567_050 Hb_000046_440--Hb_000567_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2937 9.39018 4.33215 6.82528 17.0116 26.0491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8802 7.81746 10.6548 13.7625 13.9421

CAGE analysis