Hb_000510_210

Information

Type -
Description -
Location Contig510: 188362-189636
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24000g
description POPTRDRAFT_861846; hypothetical protein
nr
ID XP_012092108.1
description PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q941F1
description Phospholipase A1-Igamma1, chloroplastic OS=Arabidopsis thaliana GN=At1g06800 PE=1 SV=2
trembl
ID A0A067JBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21837 PE=4 SV=1
Gene Ontology
ID GO:0016787
description phospholipase a1- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_210 0.0 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
2 Hb_000566_170 0.0178274775 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
3 Hb_106728_020 0.0605507694 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004631_030 0.0813774407 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
5 Hb_179118_010 0.0976748981 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
6 Hb_012516_030 0.1146453067 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
7 Hb_011206_050 0.1231334187 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
8 Hb_004590_010 0.1296804823 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
9 Hb_000956_060 0.1303612874 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
10 Hb_148914_020 0.1373515995 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
11 Hb_000297_220 0.1381231486 - - SAUR family protein [Theobroma cacao]
12 Hb_002054_090 0.1418986232 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
13 Hb_012395_150 0.1428958416 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
14 Hb_001369_530 0.1447088914 - - 21 kDa protein precursor, putative [Ricinus communis]
15 Hb_000002_230 0.14534066 - - RING/U-box superfamily protein [Theobroma cacao]
16 Hb_000270_550 0.1468207017 - - -
17 Hb_004218_220 0.148191677 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_002894_040 0.1490249607 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005144_100 0.1491823798 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
20 Hb_005900_020 0.1495109214 - - -

Gene co-expression network

sample Hb_000510_210 Hb_000510_210 Hb_000566_170 Hb_000566_170 Hb_000510_210--Hb_000566_170 Hb_106728_020 Hb_106728_020 Hb_000510_210--Hb_106728_020 Hb_004631_030 Hb_004631_030 Hb_000510_210--Hb_004631_030 Hb_179118_010 Hb_179118_010 Hb_000510_210--Hb_179118_010 Hb_012516_030 Hb_012516_030 Hb_000510_210--Hb_012516_030 Hb_011206_050 Hb_011206_050 Hb_000510_210--Hb_011206_050 Hb_000566_170--Hb_106728_020 Hb_000566_170--Hb_004631_030 Hb_000566_170--Hb_179118_010 Hb_000566_170--Hb_012516_030 Hb_000566_170--Hb_011206_050 Hb_106728_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_106728_020--Hb_004590_010 Hb_148914_020 Hb_148914_020 Hb_106728_020--Hb_148914_020 Hb_005900_020 Hb_005900_020 Hb_106728_020--Hb_005900_020 Hb_000297_220 Hb_000297_220 Hb_004631_030--Hb_000297_220 Hb_004631_030--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_004631_030--Hb_000956_060 Hb_002054_090 Hb_002054_090 Hb_004631_030--Hb_002054_090 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_179118_010--Hb_005900_020 Hb_012516_030--Hb_000297_220 Hb_012516_030--Hb_000956_060 Hb_000975_130 Hb_000975_130 Hb_012516_030--Hb_000975_130 Hb_002044_110 Hb_002044_110 Hb_011206_050--Hb_002044_110 Hb_004218_220 Hb_004218_220 Hb_011206_050--Hb_004218_220 Hb_011206_050--Hb_000975_130 Hb_011206_050--Hb_000956_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.247219 0.0890983 0.620574 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.249528 0

CAGE analysis