Hb_000510_230

Information

Type -
Description -
Location Contig510: 200091-208809
Sequence    

Annotation

kegg
ID rcu:RCOM_0992050
description F-box/leucine rich repeat protein, putative
nr
ID XP_012092110.1
description PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
swissprot
ID Q8W104
description F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana GN=FBL17 PE=1 SV=1
trembl
ID A0A067JC33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21838 PE=4 SV=1
Gene Ontology
ID GO:0001673
description f-box lrr-repeat protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46297: 200362-201265 , PASA_asmbl_46298: 201276-202461 , PASA_asmbl_46299: 206225-208716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_230 0.0 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
2 Hb_000394_110 0.1515774301 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_003147_070 0.1558810767 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
4 Hb_000529_150 0.1599533115 - - protein with unknown function [Ricinus communis]
5 Hb_004920_070 0.171253008 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
6 Hb_008768_020 0.174475405 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
7 Hb_000069_240 0.1837919081 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
8 Hb_031822_010 0.1967562303 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]
9 Hb_005375_050 0.2042089537 - - inorganic pyrophosphatase, putative [Ricinus communis]
10 Hb_005701_110 0.2172750053 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
11 Hb_012545_030 0.2182435341 - - Polyadenylate-binding protein RBP47C [Glycine soja]
12 Hb_000025_370 0.2216084585 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
13 Hb_118282_010 0.2241227612 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
14 Hb_127194_010 0.2245087946 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
15 Hb_002849_140 0.2266831545 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
16 Hb_001771_080 0.2268845589 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
17 Hb_003776_040 0.2294394162 - - PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
18 Hb_009486_210 0.2295144898 - - -
19 Hb_007558_020 0.2299903745 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
20 Hb_000046_310 0.2302838636 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_230 Hb_000510_230 Hb_000394_110 Hb_000394_110 Hb_000510_230--Hb_000394_110 Hb_003147_070 Hb_003147_070 Hb_000510_230--Hb_003147_070 Hb_000529_150 Hb_000529_150 Hb_000510_230--Hb_000529_150 Hb_004920_070 Hb_004920_070 Hb_000510_230--Hb_004920_070 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_000069_240 Hb_000069_240 Hb_000510_230--Hb_000069_240 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_012545_030 Hb_012545_030 Hb_003147_070--Hb_012545_030 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_000529_150--Hb_031822_010 Hb_000529_150--Hb_000394_110 Hb_000529_150--Hb_003147_070 Hb_002909_020 Hb_002909_020 Hb_000529_150--Hb_002909_020 Hb_118282_010 Hb_118282_010 Hb_000529_150--Hb_118282_010 Hb_004920_070--Hb_000069_240 Hb_004920_070--Hb_003147_070 Hb_004920_070--Hb_000394_110 Hb_002849_140 Hb_002849_140 Hb_004920_070--Hb_002849_140 Hb_004920_070--Hb_000529_150 Hb_005701_110 Hb_005701_110 Hb_008768_020--Hb_005701_110 Hb_008768_020--Hb_003147_070 Hb_000529_280 Hb_000529_280 Hb_008768_020--Hb_000529_280 Hb_005181_160 Hb_005181_160 Hb_008768_020--Hb_005181_160 Hb_008768_020--Hb_000057_140 Hb_000025_370 Hb_000025_370 Hb_008768_020--Hb_000025_370 Hb_000069_240--Hb_012545_030 Hb_003549_130 Hb_003549_130 Hb_000069_240--Hb_003549_130 Hb_008173_060 Hb_008173_060 Hb_000069_240--Hb_008173_060 Hb_000069_240--Hb_003147_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.687593 4.52723 9.73967 2.07758 0.464369 0.0985666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78816 4.54755 2.18183 1.36719 0.19803

CAGE analysis