Hb_000510_240

Information

Type desease resistance
Description Gene Name: PRK
Location Contig510: 212396-217362
Sequence    

Annotation

kegg
ID rcu:RCOM_0992040
description ATP binding protein, putative (EC:2.7.1.48)
nr
ID XP_002520981.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9UTC5
description Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1
trembl
ID B9S4S4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0992040 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uridine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46301: 212262-217892 , PASA_asmbl_46302: 214793-217793 , PASA_asmbl_46303: 212852-213317
cDNA
(Sanger)
(ID:Location)		 049_L01.ab1: 212263-214783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_240 0.0 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
2 Hb_000227_070 0.0645973446 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
3 Hb_016522_010 0.1006065192 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
4 Hb_000210_120 0.1024120746 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
5 Hb_002193_030 0.1070193167 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
6 Hb_000103_270 0.1070481971 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
7 Hb_005914_170 0.1074789325 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
8 Hb_000096_160 0.1080383148 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
9 Hb_000286_200 0.1109461352 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_000286_060 0.1157360354 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
11 Hb_000159_130 0.1166422551 - - RNA binding protein, putative [Ricinus communis]
12 Hb_006907_130 0.1169082156 - - unnamed protein product [Coffea canephora]
13 Hb_152371_010 0.1176449185 - - RNA-binding KH domain-containing protein [Theobroma cacao]
14 Hb_001195_200 0.1183244844 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
15 Hb_001085_240 0.1186024222 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
16 Hb_010174_150 0.1188986594 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003633_050 0.1260905416 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
18 Hb_001314_050 0.1275402802 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
19 Hb_019053_030 0.1281833507 - - PREDICTED: sulfite oxidase [Jatropha curcas]
20 Hb_003376_250 0.1287582271 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000510_240 Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000510_240--Hb_000227_070 Hb_016522_010 Hb_016522_010 Hb_000510_240--Hb_016522_010 Hb_000210_120 Hb_000210_120 Hb_000510_240--Hb_000210_120 Hb_002193_030 Hb_002193_030 Hb_000510_240--Hb_002193_030 Hb_000103_270 Hb_000103_270 Hb_000510_240--Hb_000103_270 Hb_005914_170 Hb_005914_170 Hb_000510_240--Hb_005914_170 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_016522_010--Hb_000210_120 Hb_000210_120--Hb_005914_170 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_001195_200 Hb_001195_200 Hb_002193_030--Hb_001195_200 Hb_000917_230 Hb_000917_230 Hb_002193_030--Hb_000917_230 Hb_000327_180 Hb_000327_180 Hb_002193_030--Hb_000327_180 Hb_003465_030 Hb_003465_030 Hb_002193_030--Hb_003465_030 Hb_002994_030 Hb_002994_030 Hb_002193_030--Hb_002994_030 Hb_001268_410 Hb_001268_410 Hb_002193_030--Hb_001268_410 Hb_009687_010 Hb_009687_010 Hb_000103_270--Hb_009687_010 Hb_000103_270--Hb_000096_160 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_000103_270--Hb_003098_020 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10989 2.26136 1.96768 4.4061 2.12112 3.57231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72303 7.36067 3.68699 9.53501 6.2816

CAGE analysis