Hb_000510_290

Information

Type -
Description -
Location Contig510: 282336-285719
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04600g
description POPTRDRAFT_551099; hypothetical protein
nr
ID XP_012092115.1
description PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SX99
description Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1
trembl
ID A0A067JC37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21843 PE=4 SV=1
Gene Ontology
ID GO:0003697
description protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46308: 282248-285717
cDNA
(Sanger)
(ID:Location)		 003_P08.ab1: 284188-285717 , 014_C08.ab1: 284595-285717 , 016_J03.ab1: 282600-285703 , 040_H09.ab1: 282646-285703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_290 0.0 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
2 Hb_000614_220 0.0728378012 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
3 Hb_000130_220 0.0840738847 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
4 Hb_001322_110 0.0857844437 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003020_220 0.0914436424 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
6 Hb_003038_240 0.0953255491 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011689_120 0.1013834686 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_027654_060 0.1019211986 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
9 Hb_005116_050 0.1022683058 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000046_050 0.1045360472 - - PREDICTED: LEC14B homolog [Jatropha curcas]
11 Hb_000614_160 0.1050786398 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
12 Hb_003124_150 0.1052642515 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
13 Hb_008421_020 0.1060272116 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
14 Hb_004223_030 0.1064080376 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
15 Hb_000352_270 0.1070397836 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
16 Hb_002408_020 0.107114851 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
17 Hb_000173_250 0.1076247131 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
18 Hb_004324_270 0.1078231329 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
19 Hb_000811_070 0.1104095573 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
20 Hb_002799_110 0.1107743682 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_290 Hb_000510_290 Hb_000614_220 Hb_000614_220 Hb_000510_290--Hb_000614_220 Hb_000130_220 Hb_000130_220 Hb_000510_290--Hb_000130_220 Hb_001322_110 Hb_001322_110 Hb_000510_290--Hb_001322_110 Hb_003020_220 Hb_003020_220 Hb_000510_290--Hb_003020_220 Hb_003038_240 Hb_003038_240 Hb_000510_290--Hb_003038_240 Hb_011689_120 Hb_011689_120 Hb_000510_290--Hb_011689_120 Hb_002799_110 Hb_002799_110 Hb_000614_220--Hb_002799_110 Hb_027654_060 Hb_027654_060 Hb_000614_220--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_000614_220--Hb_000614_160 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_005116_050 Hb_005116_050 Hb_000130_220--Hb_005116_050 Hb_001766_050 Hb_001766_050 Hb_000130_220--Hb_001766_050 Hb_000482_040 Hb_000482_040 Hb_000130_220--Hb_000482_040 Hb_001541_120 Hb_001541_120 Hb_000130_220--Hb_001541_120 Hb_000805_100 Hb_000805_100 Hb_000130_220--Hb_000805_100 Hb_012799_170 Hb_012799_170 Hb_001322_110--Hb_012799_170 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_003038_240--Hb_012114_070 Hb_005162_060 Hb_005162_060 Hb_003038_240--Hb_005162_060 Hb_003038_240--Hb_003124_150 Hb_158445_010 Hb_158445_010 Hb_003038_240--Hb_158445_010 Hb_000729_030 Hb_000729_030 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_006846_150 Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_011689_120--Hb_000811_070 Hb_001318_260 Hb_001318_260 Hb_011689_120--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1057 35.065 50.1416 24.6317 24.9792 33.747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6438 80.1239 62.7356 27.773 80.488

CAGE analysis