Hb_000510_320

Information

Type -
Description -
Location Contig510: 303734-310170
Sequence    

Annotation

kegg
ID rcu:RCOM_0767340
description hypothetical protein
nr
ID XP_012092125.1
description PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
swissprot
ID A4G9I1
description Sec-independent protein translocase protein TatB OS=Herminiimonas arsenicoxydans GN=tatB PE=3 SV=1
trembl
ID A0A067JMX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21846 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46314: 303762-310141 , PASA_asmbl_46315: 303784-310125 , PASA_asmbl_46316: 309769-310084
cDNA
(Sanger)
(ID:Location)		 053_P17.ab1: 307867-310126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_320 0.0 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
2 Hb_002105_040 0.0619826709 - - -
3 Hb_000175_460 0.0623426872 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_000086_400 0.0650078544 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_004738_040 0.0697277738 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
6 Hb_000876_070 0.0743456171 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_181288_020 0.075157878 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
8 Hb_158467_010 0.0757984089 - - transporter, putative [Ricinus communis]
9 Hb_004254_120 0.0763752609 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005289_030 0.0787527998 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
11 Hb_000409_020 0.0787536116 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
12 Hb_001009_270 0.0789941794 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_001277_330 0.0799034058 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
14 Hb_000207_250 0.080395673 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
15 Hb_032264_110 0.082595461 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
16 Hb_005618_170 0.0828688915 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
17 Hb_004109_090 0.0830718591 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_002687_110 0.0832990747 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
19 Hb_006541_030 0.0837534605 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
20 Hb_189003_080 0.0845129994 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_320 Hb_000510_320 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_002105_040--Hb_000876_070 Hb_004724_080 Hb_004724_080 Hb_002105_040--Hb_004724_080 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000175_460--Hb_000876_070 Hb_085863_030 Hb_085863_030 Hb_000086_400--Hb_085863_030 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_009178_030 Hb_009178_030 Hb_000086_400--Hb_009178_030 Hb_000086_400--Hb_000175_460 Hb_000086_400--Hb_000876_070 Hb_002687_110 Hb_002687_110 Hb_004738_040--Hb_002687_110 Hb_001277_330 Hb_001277_330 Hb_004738_040--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_004738_040--Hb_005625_020 Hb_000409_020 Hb_000409_020 Hb_004738_040--Hb_000409_020 Hb_000431_010 Hb_000431_010 Hb_004738_040--Hb_000431_010 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000046_320 Hb_000046_320 Hb_181288_020--Hb_000046_320 Hb_181288_020--Hb_004724_080 Hb_003683_160 Hb_003683_160 Hb_181288_020--Hb_003683_160 Hb_181288_020--Hb_000086_400 Hb_000749_220 Hb_000749_220 Hb_181288_020--Hb_000749_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7005 10.2518 8.52212 15.1131 20.3836 21.5579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3774 28.0237 34.2718 11.5363 8.70592

CAGE analysis