Hb_000512_010

Information

Type -
Description -
Location Contig512: 6243-10211
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03860g
description POPTRDRAFT_903377; hypothetical protein
nr
ID XP_012093059.1
description PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
swissprot
ID Q9C9T2
description Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana GN=SARD1 PE=1 SV=1
trembl
ID A0A067J8P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05915 PE=4 SV=1
Gene Ontology
ID GO:0005516
description calmodulin-binding protein 60-c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46363: 9487-10182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_010 0.0 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
2 Hb_174829_020 0.0850176134 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
3 Hb_001104_170 0.1008771555 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
4 Hb_000019_040 0.1033293905 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
5 Hb_052764_030 0.1093907463 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_014068_050 0.1134094211 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
7 Hb_000291_010 0.1173968561 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
8 Hb_001766_020 0.1248622645 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
9 Hb_001279_170 0.1250003267 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
10 Hb_002301_170 0.1275512446 - - MAC/Perforin domain-containing protein [Theobroma cacao]
11 Hb_000363_210 0.1310833054 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
12 Hb_006538_080 0.1325416929 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
13 Hb_008103_110 0.1328574337 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000023_350 0.1331288204 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
15 Hb_000363_400 0.134238327 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
16 Hb_013241_010 0.1352573043 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
17 Hb_005389_160 0.1377401811 - - PREDICTED: casein kinase I [Jatropha curcas]
18 Hb_002311_480 0.1422375854 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
19 Hb_000373_230 0.1439436782 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
20 Hb_008695_090 0.1447208557 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000512_010 Hb_000512_010 Hb_174829_020 Hb_174829_020 Hb_000512_010--Hb_174829_020 Hb_001104_170 Hb_001104_170 Hb_000512_010--Hb_001104_170 Hb_000019_040 Hb_000019_040 Hb_000512_010--Hb_000019_040 Hb_052764_030 Hb_052764_030 Hb_000512_010--Hb_052764_030 Hb_014068_050 Hb_014068_050 Hb_000512_010--Hb_014068_050 Hb_000291_010 Hb_000291_010 Hb_000512_010--Hb_000291_010 Hb_002311_480 Hb_002311_480 Hb_174829_020--Hb_002311_480 Hb_174829_020--Hb_000291_010 Hb_174829_020--Hb_052764_030 Hb_174829_020--Hb_000019_040 Hb_000011_050 Hb_000011_050 Hb_174829_020--Hb_000011_050 Hb_000442_010 Hb_000442_010 Hb_001104_170--Hb_000442_010 Hb_005389_160 Hb_005389_160 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_000976_280 Hb_000976_280 Hb_000019_040--Hb_000976_280 Hb_006788_140 Hb_006788_140 Hb_000019_040--Hb_006788_140 Hb_000019_040--Hb_001766_020 Hb_000019_040--Hb_052764_030 Hb_000019_040--Hb_001104_170 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_009486_160 Hb_009486_160 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_052764_030--Hb_001104_170 Hb_052764_030--Hb_000291_010 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_000111_180 Hb_000111_180 Hb_014068_050--Hb_000111_180 Hb_014068_050--Hb_002301_170 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_012239_020 Hb_012239_020 Hb_000291_010--Hb_012239_020 Hb_005018_020 Hb_005018_020 Hb_000291_010--Hb_005018_020 Hb_060094_020 Hb_060094_020 Hb_000291_010--Hb_060094_020 Hb_001279_170 Hb_001279_170 Hb_000291_010--Hb_001279_170 Hb_000086_420 Hb_000086_420 Hb_000291_010--Hb_000086_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50265 6.4701 4.60625 2.00418 1.48063 0.990382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07267 1.99034 3.24645 3.26308 1.05444

CAGE analysis