Hb_000512_050

Information

Type -
Description -
Location Contig512: 47740-54820
Sequence    

Annotation

kegg
ID zma:100502343
description uncharacterized LOC100502343
nr
ID CAN64324.1
description hypothetical protein VITISV_005640 [Vitis vinifera]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A5C8A6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description opie3 pol protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_050 0.0 - - hypothetical protein VITISV_005640 [Vitis vinifera]
2 Hb_005623_060 0.0596913555 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_080033_020 0.0706876872 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
4 Hb_003169_040 0.0837547714 - - -
5 Hb_180214_010 0.1191095847 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_150516_010 0.1284044426 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
7 Hb_003302_010 0.1319150583 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
8 Hb_023738_010 0.1420638419 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
9 Hb_006040_150 0.1464651437 - - -
10 Hb_014109_020 0.154017269 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
11 Hb_000522_030 0.1565564342 - - hypothetical protein VITISV_006017 [Vitis vinifera]
12 Hb_001383_080 0.1592778999 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
13 Hb_000826_080 0.163751556 - - -
14 Hb_032733_030 0.1670703165 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
15 Hb_004374_090 0.1735065526 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
16 Hb_032717_090 0.1741812195 - - conserved hypothetical protein [Ricinus communis]
17 Hb_144027_010 0.177465235 - - -
18 Hb_001355_050 0.1794701895 - - -
19 Hb_003900_040 0.1798327502 - - hypothetical protein [Lotus japonicus]
20 Hb_011931_090 0.1800570218 - - -

Gene co-expression network

sample Hb_000512_050 Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_000512_050--Hb_005623_060 Hb_080033_020 Hb_080033_020 Hb_000512_050--Hb_080033_020 Hb_003169_040 Hb_003169_040 Hb_000512_050--Hb_003169_040 Hb_180214_010 Hb_180214_010 Hb_000512_050--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_000512_050--Hb_150516_010 Hb_003302_010 Hb_003302_010 Hb_000512_050--Hb_003302_010 Hb_005623_060--Hb_150516_010 Hb_005623_060--Hb_003169_040 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_080033_020--Hb_003169_040 Hb_003169_040--Hb_180214_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_003169_040--Hb_003900_040 Hb_180214_010--Hb_032717_090 Hb_180214_010--Hb_003900_040 Hb_180214_010--Hb_005623_060 Hb_001383_080 Hb_001383_080 Hb_180214_010--Hb_001383_080 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_023738_010 Hb_023738_010 Hb_003302_010--Hb_023738_010 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_005092_090 Hb_005092_090 Hb_003302_010--Hb_005092_090 Hb_000060_130 Hb_000060_130 Hb_003302_010--Hb_000060_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0256056 0.0201856 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0122342 0.163235

CAGE analysis