Hb_000512_080

Information

Type -
Description -
Location Contig512: 78838-82274
Sequence    

Annotation

kegg
ID rcu:RCOM_1110630
description ankyrin repeat-containing protein, putative
nr
ID XP_002521638.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9S6L9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1110630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46368: 80546-80891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_080 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_003636_010 0.0974876919 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
3 Hb_000223_050 0.1058900929 - - PREDICTED: endochitinase A-like [Jatropha curcas]
4 Hb_152718_010 0.1272758343 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_001514_100 0.128496677 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
6 Hb_000265_020 0.1307233188 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
7 Hb_002085_070 0.1316068683 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000035_300 0.1326206807 - - conserved hypothetical protein [Ricinus communis]
9 Hb_118777_010 0.1337957182 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_003117_060 0.1346163453 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_011791_010 0.1360750173 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
12 Hb_015912_010 0.1373118658 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001481_030 0.139643519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000343_280 0.141528693 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
15 Hb_000322_200 0.1440448281 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
16 Hb_079955_010 0.1492733015 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
17 Hb_000030_260 0.1499699288 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
18 Hb_000489_020 0.1500837126 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
19 Hb_106969_010 0.1554345743 - - Cytochrome P450 76C4 [Glycine soja]
20 Hb_165404_010 0.1555876621 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]

Gene co-expression network

sample Hb_000512_080 Hb_000512_080 Hb_003636_010 Hb_003636_010 Hb_000512_080--Hb_003636_010 Hb_000223_050 Hb_000223_050 Hb_000512_080--Hb_000223_050 Hb_152718_010 Hb_152718_010 Hb_000512_080--Hb_152718_010 Hb_001514_100 Hb_001514_100 Hb_000512_080--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_000512_080--Hb_000265_020 Hb_002085_070 Hb_002085_070 Hb_000512_080--Hb_002085_070 Hb_118777_010 Hb_118777_010 Hb_003636_010--Hb_118777_010 Hb_003117_060 Hb_003117_060 Hb_003636_010--Hb_003117_060 Hb_000070_140 Hb_000070_140 Hb_003636_010--Hb_000070_140 Hb_106969_010 Hb_106969_010 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_000075_110 Hb_000075_110 Hb_000223_050--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000223_050--Hb_006970_150 Hb_001481_030 Hb_001481_030 Hb_000223_050--Hb_001481_030 Hb_165404_010 Hb_165404_010 Hb_000223_050--Hb_165404_010 Hb_000223_050--Hb_002085_070 Hb_152718_010--Hb_118777_010 Hb_005333_100 Hb_005333_100 Hb_152718_010--Hb_005333_100 Hb_000489_020 Hb_000489_020 Hb_152718_010--Hb_000489_020 Hb_000976_060 Hb_000976_060 Hb_152718_010--Hb_000976_060 Hb_152718_010--Hb_000265_020 Hb_001769_030 Hb_001769_030 Hb_152718_010--Hb_001769_030 Hb_001514_100--Hb_002085_070 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_012018_020 Hb_012018_020 Hb_001514_100--Hb_012018_020 Hb_000002_100 Hb_000002_100 Hb_001514_100--Hb_000002_100 Hb_000521_290 Hb_000521_290 Hb_001514_100--Hb_000521_290 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060 Hb_033045_010 Hb_033045_010 Hb_000265_020--Hb_033045_010 Hb_000265_020--Hb_000489_020 Hb_000265_020--Hb_002085_070 Hb_000265_020--Hb_006970_150 Hb_000265_020--Hb_000521_290 Hb_000265_020--Hb_012018_020 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_002085_070--Hb_012018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.16287 0.454707 0.130902 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28607 0.0716525

CAGE analysis