Hb_000513_090

Information

Type -
Description -
Location Contig513: 63670-74321
Sequence    

Annotation

kegg
ID tcc:TCM_016929
description Isocitrate/isopropylmalate dehydrogenase family protein isoform 1
nr
ID XP_012081175.1
description PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
swissprot
ID Q8LPJ5
description Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At5g14590 PE=2 SV=1
trembl
ID A0A067LDM2
description Isocitrate dehydrogenase [NADP] OS=Jatropha curcas GN=JCGZ_09562 PE=3 SV=1
Gene Ontology
ID GO:0009534
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46389: 63675-72740 , PASA_asmbl_46390: 63676-68151 , PASA_asmbl_46391: 72853-73115
cDNA
(Sanger)
(ID:Location)		 050_F11.ab1: 63676-66794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000513_090 0.0 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
2 Hb_002909_040 0.061533775 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
3 Hb_004586_060 0.0637455969 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
4 Hb_002014_010 0.0690749072 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_000139_320 0.072982452 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_000340_030 0.0730002818 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
7 Hb_000236_490 0.0738023143 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_000085_170 0.0739231833 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
9 Hb_000702_090 0.0769790834 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
10 Hb_001723_010 0.0772541209 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
11 Hb_004109_320 0.0784168907 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
12 Hb_000684_510 0.0805796276 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
13 Hb_000402_150 0.0807143604 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
14 Hb_001366_090 0.081263107 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
15 Hb_010775_030 0.081624547 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
16 Hb_005730_010 0.0817589592 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
17 Hb_004096_160 0.0818588103 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_004994_010 0.0819110521 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
19 Hb_000358_230 0.0822790049 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_003711_010 0.0832385189 - - isopropylmalate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000513_090 Hb_000513_090 Hb_002909_040 Hb_002909_040 Hb_000513_090--Hb_002909_040 Hb_004586_060 Hb_004586_060 Hb_000513_090--Hb_004586_060 Hb_002014_010 Hb_002014_010 Hb_000513_090--Hb_002014_010 Hb_000139_320 Hb_000139_320 Hb_000513_090--Hb_000139_320 Hb_000340_030 Hb_000340_030 Hb_000513_090--Hb_000340_030 Hb_000236_490 Hb_000236_490 Hb_000513_090--Hb_000236_490 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000089_210 Hb_000089_210 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_002014_010--Hb_007248_030 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_002014_010--Hb_171900_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000340_030--Hb_001723_010 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_000236_490--Hb_004586_060 Hb_000236_490--Hb_007062_040 Hb_000236_490--Hb_004096_160 Hb_000236_490--Hb_002909_040 Hb_001366_090 Hb_001366_090 Hb_000236_490--Hb_001366_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.04039 10.6479 13.5618 9.88128 8.16 6.67018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58417 6.3828 5.47596 11.2675 5.37553

CAGE analysis