Hb_000514_060

Information

Type transcription factor
Description TF Family: LUG
Location Contig514: 126561-139417
Sequence    

Annotation

kegg
ID tcc:TCM_038331
description LisH dimerization motif,WD40/YVTN repeat-like-containing domain isoform 1
nr
ID XP_012078639.1
description PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067KBC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13223 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46408: 126577-139370 , PASA_asmbl_46409: 126577-139370 , PASA_asmbl_46410: 126577-139370 , PASA_asmbl_46411: 126564-139370 , PASA_asmbl_46412: 126577-139370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000514_060 0.0 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
2 Hb_009411_010 0.0739154347 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
3 Hb_007757_110 0.0748442803 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
4 Hb_001797_050 0.0755236038 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
5 Hb_000796_030 0.0758642485 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
6 Hb_002232_030 0.0759768736 - - Pinin, putative [Ricinus communis]
7 Hb_001930_010 0.0780949042 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
8 Hb_001541_020 0.0804324474 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
9 Hb_000463_140 0.0807977366 - - Poly(rC)-binding protein, putative [Ricinus communis]
10 Hb_002255_050 0.0831463703 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
11 Hb_014267_010 0.0833649795 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
12 Hb_006649_060 0.0837473666 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003938_080 0.0840663251 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
14 Hb_004724_060 0.0842470336 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
15 Hb_000574_440 0.0846012044 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
16 Hb_022408_010 0.0846319761 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
17 Hb_007586_030 0.0855395879 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_002025_020 0.0881822265 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
19 Hb_000005_380 0.0882453411 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
20 Hb_000244_250 0.0894732236 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000514_060 Hb_000514_060 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_007757_110 Hb_007757_110 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030 Hb_001930_010 Hb_001930_010 Hb_000514_060--Hb_001930_010 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_001584_150 Hb_001584_150 Hb_007757_110--Hb_001584_150 Hb_000152_820 Hb_000152_820 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_009503_030 Hb_009503_030 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_000009_600 Hb_000009_600 Hb_002232_030--Hb_000009_600 Hb_004228_010 Hb_004228_010 Hb_002232_030--Hb_004228_010 Hb_000796_040 Hb_000796_040 Hb_002232_030--Hb_000796_040 Hb_000853_210 Hb_000853_210 Hb_002232_030--Hb_000853_210 Hb_064903_010 Hb_064903_010 Hb_002232_030--Hb_064903_010 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_001930_010--Hb_000390_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.4709 39.0405 18.8151 17.7465 59.0988 51.8981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5729 20.3644 53.6421 24.5249 27.5462

CAGE analysis