Hb_000516_070

Information

Type -
Description -
Location Contig516: 113935-115624
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000516_070 0.0 - - -
2 Hb_000696_020 0.2236682482 - - hypothetical protein JCGZ_25344 [Jatropha curcas]
3 Hb_004522_020 0.2714290753 - - PREDICTED: uncharacterized protein LOC105646836 [Jatropha curcas]
4 Hb_002631_220 0.3066165011 - - Patellin-4, putative [Ricinus communis]
5 Hb_167364_020 0.3095682871 - - -
6 Hb_000861_010 0.31202596 - - -
7 Hb_000832_330 0.3270836525 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
8 Hb_007592_020 0.3478448141 - - acyltransferase, putative [Ricinus communis]
9 Hb_018599_010 0.3500028767 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
10 Hb_005725_200 0.3604195115 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
11 Hb_000088_220 0.3604275245 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
12 Hb_003680_110 0.3614082729 - - zinc finger protein, putative [Ricinus communis]
13 Hb_001146_090 0.3643309201 - - valacyclovir hydrolase, putative [Ricinus communis]
14 Hb_006671_020 0.3737530246 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
15 Hb_025669_030 0.3798255279 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
16 Hb_004524_070 0.3820694385 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
17 Hb_002447_160 0.3833818909 - - -
18 Hb_005511_170 0.3836861547 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
19 Hb_032264_080 0.3861618753 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
20 Hb_000003_140 0.3898524207 - - hypothetical protein glysoja_047034, partial [Glycine soja]

Gene co-expression network

sample Hb_000516_070 Hb_000516_070 Hb_000696_020 Hb_000696_020 Hb_000516_070--Hb_000696_020 Hb_004522_020 Hb_004522_020 Hb_000516_070--Hb_004522_020 Hb_002631_220 Hb_002631_220 Hb_000516_070--Hb_002631_220 Hb_167364_020 Hb_167364_020 Hb_000516_070--Hb_167364_020 Hb_000861_010 Hb_000861_010 Hb_000516_070--Hb_000861_010 Hb_000832_330 Hb_000832_330 Hb_000516_070--Hb_000832_330 Hb_025669_030 Hb_025669_030 Hb_000696_020--Hb_025669_030 Hb_001623_310 Hb_001623_310 Hb_000696_020--Hb_001623_310 Hb_006535_010 Hb_006535_010 Hb_000696_020--Hb_006535_010 Hb_002447_160 Hb_002447_160 Hb_000696_020--Hb_002447_160 Hb_033594_010 Hb_033594_010 Hb_000696_020--Hb_033594_010 Hb_000003_140 Hb_000003_140 Hb_004522_020--Hb_000003_140 Hb_005743_090 Hb_005743_090 Hb_004522_020--Hb_005743_090 Hb_004522_020--Hb_001623_310 Hb_004522_020--Hb_167364_020 Hb_001329_170 Hb_001329_170 Hb_004522_020--Hb_001329_170 Hb_001214_150 Hb_001214_150 Hb_002631_220--Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_002631_220--Hb_004945_020 Hb_002631_220--Hb_002447_160 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_007592_020 Hb_007592_020 Hb_002631_220--Hb_007592_020 Hb_126648_010 Hb_126648_010 Hb_002631_220--Hb_126648_010 Hb_167364_020--Hb_005743_090 Hb_000513_080 Hb_000513_080 Hb_167364_020--Hb_000513_080 Hb_000866_360 Hb_000866_360 Hb_167364_020--Hb_000866_360 Hb_000189_060 Hb_000189_060 Hb_167364_020--Hb_000189_060 Hb_000088_210 Hb_000088_210 Hb_000861_010--Hb_000088_210 Hb_001519_070 Hb_001519_070 Hb_000861_010--Hb_001519_070 Hb_003225_030 Hb_003225_030 Hb_000861_010--Hb_003225_030 Hb_018599_010 Hb_018599_010 Hb_000861_010--Hb_018599_010 Hb_011689_130 Hb_011689_130 Hb_000861_010--Hb_011689_130 Hb_003405_040 Hb_003405_040 Hb_000832_330--Hb_003405_040 Hb_001935_210 Hb_001935_210 Hb_000832_330--Hb_001935_210 Hb_001414_130 Hb_001414_130 Hb_000832_330--Hb_001414_130 Hb_018118_040 Hb_018118_040 Hb_000832_330--Hb_018118_040 Hb_000025_550 Hb_000025_550 Hb_000832_330--Hb_000025_550 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144629 0.0452998 0.136945 0 0.0415581 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0807578 0 0.033142 0

CAGE analysis