Hb_000518_040

Information

Type -
Description -
Location Contig518: 67617-68777
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000518_040 0.0 - - -
2 Hb_104735_020 0.1521655548 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
3 Hb_117001_010 0.154435408 - - -
4 Hb_144027_010 0.1643394937 - - -
5 Hb_006405_040 0.1871880604 - - hypothetical protein VITISV_026680 [Vitis vinifera]
6 Hb_062273_010 0.2044760123 - - ATP synthase F0 subunit 9 [Chara vulgaris]
7 Hb_072212_020 0.2052762999 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
8 Hb_042463_020 0.2089882191 - - conserved hypothetical protein [Ricinus communis]
9 Hb_102602_020 0.2120535691 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
10 Hb_003362_020 0.2125265952 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
11 Hb_032717_090 0.2172158891 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003900_040 0.221396665 - - hypothetical protein [Lotus japonicus]
13 Hb_001385_070 0.2278138274 - - hypothetical protein VITISV_019194 [Vitis vinifera]
14 Hb_062192_010 0.2286366645 - - -
15 Hb_101733_010 0.2299510944 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001383_080 0.2307211079 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
17 Hb_007543_020 0.2322472499 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_002687_070 0.2331217721 - - polyprotein [Ananas comosus]
19 Hb_004899_210 0.2338939779 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
20 Hb_005466_010 0.23431084 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]

Gene co-expression network

sample Hb_000518_040 Hb_000518_040 Hb_104735_020 Hb_104735_020 Hb_000518_040--Hb_104735_020 Hb_117001_010 Hb_117001_010 Hb_000518_040--Hb_117001_010 Hb_144027_010 Hb_144027_010 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_062273_010 Hb_062273_010 Hb_000518_040--Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_000518_040--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_104735_020--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_104735_020--Hb_062273_010 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_117001_010--Hb_144027_010 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_117001_010--Hb_004899_210 Hb_007575_020 Hb_007575_020 Hb_117001_010--Hb_007575_020 Hb_117001_010--Hb_104735_020 Hb_144027_010--Hb_004899_210 Hb_003900_040 Hb_003900_040 Hb_144027_010--Hb_003900_040 Hb_001383_080 Hb_001383_080 Hb_144027_010--Hb_001383_080 Hb_017640_010 Hb_017640_010 Hb_144027_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_144027_010--Hb_003169_040 Hb_102602_020 Hb_102602_020 Hb_006405_040--Hb_102602_020 Hb_001385_070 Hb_001385_070 Hb_006405_040--Hb_001385_070 Hb_000803_230 Hb_000803_230 Hb_006405_040--Hb_000803_230 Hb_006405_040--Hb_144027_010 Hb_007543_020 Hb_007543_020 Hb_006405_040--Hb_007543_020 Hb_006405_040--Hb_003900_040 Hb_062273_010--Hb_072212_020 Hb_062273_010--Hb_042463_020 Hb_062273_010--Hb_034168_070 Hb_062192_030 Hb_062192_030 Hb_062273_010--Hb_062192_030 Hb_189099_020 Hb_189099_020 Hb_062273_010--Hb_189099_020 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135416 1.31036 0.176071 0.0261004 0.249182 0.209728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0513623 0.186232 0.290809 5.06431

CAGE analysis