Hb_000521_050

Information

Type -
Description -
Location Contig521: 27956-35128
Sequence    

Annotation

kegg
ID rcu:RCOM_1776390
description hypothetical protein
nr
ID XP_012092589.1
description PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
swissprot
ID Q6NUT3
description Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=1 SV=2
trembl
ID A0A067JLJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05257 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46689: 28308-29042 , PASA_asmbl_46691: 29459-32808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_050 0.0 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
2 Hb_005194_010 0.0727255946 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
3 Hb_000023_220 0.0845574688 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
4 Hb_000291_220 0.0880404793 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
5 Hb_000300_160 0.0897619443 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
6 Hb_000085_050 0.0903130313 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001828_190 0.0948044732 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
8 Hb_007017_030 0.096275808 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
9 Hb_008406_190 0.0978103318 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
10 Hb_002805_270 0.0980462996 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003525_010 0.098593208 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
12 Hb_003780_030 0.0993614952 - - PREDICTED: protein CMSS1 [Jatropha curcas]
13 Hb_004182_040 0.09981545 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
14 Hb_008648_010 0.1005330225 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
15 Hb_000120_790 0.1028495408 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_108350_010 0.1042911829 - - GTP-binding protein erg, putative [Ricinus communis]
17 Hb_002043_190 0.1079629447 - - rwd domain-containing protein, putative [Ricinus communis]
18 Hb_002477_070 0.1083807586 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
19 Hb_000206_210 0.1087045664 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
20 Hb_000054_090 0.1087141052 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000521_050 Hb_000521_050 Hb_005194_010 Hb_005194_010 Hb_000521_050--Hb_005194_010 Hb_000023_220 Hb_000023_220 Hb_000521_050--Hb_000023_220 Hb_000291_220 Hb_000291_220 Hb_000521_050--Hb_000291_220 Hb_000300_160 Hb_000300_160 Hb_000521_050--Hb_000300_160 Hb_000085_050 Hb_000085_050 Hb_000521_050--Hb_000085_050 Hb_001828_190 Hb_001828_190 Hb_000521_050--Hb_001828_190 Hb_008648_010 Hb_008648_010 Hb_005194_010--Hb_008648_010 Hb_001828_060 Hb_001828_060 Hb_005194_010--Hb_001828_060 Hb_002477_070 Hb_002477_070 Hb_005194_010--Hb_002477_070 Hb_005194_010--Hb_001828_190 Hb_002226_070 Hb_002226_070 Hb_005194_010--Hb_002226_070 Hb_000085_160 Hb_000085_160 Hb_000023_220--Hb_000085_160 Hb_000193_190 Hb_000193_190 Hb_000023_220--Hb_000193_190 Hb_004117_130 Hb_004117_130 Hb_000023_220--Hb_004117_130 Hb_000205_100 Hb_000205_100 Hb_000023_220--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000023_220--Hb_000011_200 Hb_106371_010 Hb_106371_010 Hb_000023_220--Hb_106371_010 Hb_000058_100 Hb_000058_100 Hb_000291_220--Hb_000058_100 Hb_002043_190 Hb_002043_190 Hb_000291_220--Hb_002043_190 Hb_004182_040 Hb_004182_040 Hb_000291_220--Hb_004182_040 Hb_015746_010 Hb_015746_010 Hb_000291_220--Hb_015746_010 Hb_007017_030 Hb_007017_030 Hb_000291_220--Hb_007017_030 Hb_000291_220--Hb_001828_190 Hb_001635_180 Hb_001635_180 Hb_000300_160--Hb_001635_180 Hb_003417_020 Hb_003417_020 Hb_000300_160--Hb_003417_020 Hb_001633_050 Hb_001633_050 Hb_000300_160--Hb_001633_050 Hb_003126_050 Hb_003126_050 Hb_000300_160--Hb_003126_050 Hb_000777_040 Hb_000777_040 Hb_000300_160--Hb_000777_040 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_001828_190--Hb_007017_030 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.41 3.99968 4.91898 7.74682 17.7877 13.055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3293 19.1983 10.6529 13.8746 8.8407

CAGE analysis