Hb_000521_070

Information

Type -
Description -
Location Contig521: 40422-40796
Sequence    

Annotation

kegg
ID rcu:RCOM_1776830
description hypothetical protein
nr
ID XP_012092592.1
description PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J9E4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05259 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_070 0.0 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
2 Hb_004925_030 0.137223288 - - EXORDIUM like 1 [Theobroma cacao]
3 Hb_000302_110 0.1509945885 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_007741_090 0.1555091693 - - Autophagy-related 8f -like protein [Gossypium arboreum]
5 Hb_007575_090 0.1648152025 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
6 Hb_002030_190 0.177865027 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000206_270 0.180778602 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_006816_110 0.1845221125 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
9 Hb_000236_210 0.1853727273 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
10 Hb_001269_570 0.1892063732 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
11 Hb_003464_100 0.1955718966 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
12 Hb_001296_010 0.1960573617 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001486_050 0.1963202066 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
14 Hb_004117_330 0.2006803151 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001246_080 0.2150880527 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
16 Hb_108216_030 0.2164931081 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_156850_040 0.217378512 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
18 Hb_000302_100 0.2194589612 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
19 Hb_020831_060 0.2196276321 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
20 Hb_000220_020 0.2201348493 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]

Gene co-expression network

sample Hb_000521_070 Hb_000521_070 Hb_004925_030 Hb_004925_030 Hb_000521_070--Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_000521_070--Hb_000302_110 Hb_007741_090 Hb_007741_090 Hb_000521_070--Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_004925_030--Hb_000302_110 Hb_004925_030--Hb_007741_090 Hb_002582_080 Hb_002582_080 Hb_004925_030--Hb_002582_080 Hb_156850_040 Hb_156850_040 Hb_004925_030--Hb_156850_040 Hb_000236_210 Hb_000236_210 Hb_004925_030--Hb_000236_210 Hb_000302_110--Hb_002582_080 Hb_000302_110--Hb_007575_090 Hb_000302_110--Hb_007741_090 Hb_000302_110--Hb_156850_040 Hb_007741_090--Hb_007575_090 Hb_184541_010 Hb_184541_010 Hb_007741_090--Hb_184541_010 Hb_011918_010 Hb_011918_010 Hb_007741_090--Hb_011918_010 Hb_007575_090--Hb_011918_010 Hb_066514_010 Hb_066514_010 Hb_007575_090--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_007575_090--Hb_002900_100 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_002030_190--Hb_000206_270 Hb_011344_050 Hb_011344_050 Hb_002030_190--Hb_011344_050 Hb_001296_010 Hb_001296_010 Hb_002030_190--Hb_001296_010 Hb_000152_630 Hb_000152_630 Hb_002030_190--Hb_000152_630 Hb_000920_120 Hb_000920_120 Hb_002030_190--Hb_000920_120 Hb_013399_060 Hb_013399_060 Hb_002030_190--Hb_013399_060 Hb_012217_010 Hb_012217_010 Hb_000206_270--Hb_012217_010 Hb_000206_270--Hb_013399_060 Hb_001418_050 Hb_001418_050 Hb_000206_270--Hb_001418_050 Hb_000206_270--Hb_011344_050 Hb_000098_230 Hb_000098_230 Hb_000206_270--Hb_000098_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22665 4.94928 4.74048 81.5058 5.99088 3.00809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.452648 1.2446 0.278544 3.16844 3.35841

CAGE analysis