Hb_000521_080

Information

Type -
Description -
Location Contig521: 49887-60588
Sequence    

Annotation

kegg
ID tcc:TCM_019572
description BED zinc finger,hAT family dimerization domain isoform 1
nr
ID KHG22552.1
description Zinc finger BED domain-containing 4 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PCG3
description Zinc finger BED domain-containing 4 OS=Gossypium arboreum GN=F383_08500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46694: 49814-50572 , PASA_asmbl_46695: 51242-54555 , PASA_asmbl_46696: 53553-54555 , PASA_asmbl_46697: 51153-51464
cDNA
(Sanger)
(ID:Location)		 031_K16r.ab1: 49909-50468

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_080 0.0 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
2 Hb_002141_030 0.0619032807 - - conserved hypothetical protein [Ricinus communis]
3 Hb_062135_030 0.0804778736 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
4 Hb_000212_330 0.0839943523 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000094_300 0.0848140417 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
6 Hb_005054_230 0.0849148023 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
7 Hb_002728_070 0.0862168128 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
8 Hb_002107_030 0.090247186 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
9 Hb_003050_270 0.090954409 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
10 Hb_000020_190 0.0923002105 - - hypothetical protein RCOM_0452240 [Ricinus communis]
11 Hb_009545_080 0.0954892328 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
12 Hb_001983_020 0.0955629798 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_001124_160 0.095597452 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_002490_020 0.0963821737 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
15 Hb_004310_130 0.0984980286 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
16 Hb_001936_060 0.0989637791 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
17 Hb_002303_070 0.0994233398 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
18 Hb_003058_040 0.0995260719 - - rotamase, putative [Ricinus communis]
19 Hb_000390_180 0.0998865887 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
20 Hb_003994_290 0.1002922118 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000521_080 Hb_000521_080 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000212_330 Hb_000212_330 Hb_000521_080--Hb_000212_330 Hb_000094_300 Hb_000094_300 Hb_000521_080--Hb_000094_300 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_002490_020 Hb_002490_020 Hb_002141_030--Hb_002490_020 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330 Hb_001141_020 Hb_001141_020 Hb_062135_030--Hb_001141_020 Hb_000020_190 Hb_000020_190 Hb_062135_030--Hb_000020_190 Hb_001124_160 Hb_001124_160 Hb_062135_030--Hb_001124_160 Hb_009467_060 Hb_009467_060 Hb_062135_030--Hb_009467_060 Hb_002496_010 Hb_002496_010 Hb_062135_030--Hb_002496_010 Hb_001198_100 Hb_001198_100 Hb_062135_030--Hb_001198_100 Hb_009545_080 Hb_009545_080 Hb_000212_330--Hb_009545_080 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_008511_130 Hb_008511_130 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_000094_300--Hb_008511_130 Hb_000094_300--Hb_009545_080 Hb_000053_130 Hb_000053_130 Hb_000094_300--Hb_000053_130 Hb_000141_250 Hb_000141_250 Hb_000094_300--Hb_000141_250 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000930_030 Hb_000930_030 Hb_005054_230--Hb_000930_030 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_000025_470 Hb_000025_470 Hb_002728_070--Hb_000025_470 Hb_002728_070--Hb_054865_120 Hb_000058_100 Hb_000058_100 Hb_002728_070--Hb_000058_100 Hb_000329_140 Hb_000329_140 Hb_002728_070--Hb_000329_140 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.0127 32.0787 47.7656 36.971 47.3458 50.4029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.4133 50.1506 51.6219 55.5807 44.5943

CAGE analysis