Hb_000521_130

Information

Type -
Description -
Location Contig521: 74118-80960
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23760g
description Citrate synthase family protein
nr
ID XP_012092602.1
description PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
swissprot
ID P49298
description Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1
trembl
ID A0A067JCB3
description Citrate synthase OS=Jatropha curcas GN=JCGZ_05266 PE=3 SV=1
Gene Ontology
ID GO:0005759
description citrate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46704: 74353-80959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_130 0.0 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
2 Hb_000212_450 0.0753731197 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
3 Hb_000252_100 0.0895781923 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_000140_380 0.0898914606 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
5 Hb_004800_100 0.0946357217 - - conserved hypothetical protein [Ricinus communis]
6 Hb_017131_010 0.0947185385 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_000173_410 0.0958730332 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_009193_030 0.097219787 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
9 Hb_000538_070 0.1004762239 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
10 Hb_015778_010 0.1004954953 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
11 Hb_000454_090 0.1006354751 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
12 Hb_008245_010 0.1025275953 - - PREDICTED: protein NEDD1 [Jatropha curcas]
13 Hb_000928_110 0.1065923295 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
14 Hb_005765_050 0.1070742326 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
15 Hb_002631_010 0.1087694155 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
16 Hb_004078_040 0.1089559905 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
17 Hb_000060_050 0.110060968 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_005306_180 0.1103424668 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
19 Hb_000130_050 0.1106194106 - - 14-3-3 protein, putative [Ricinus communis]
20 Hb_002007_210 0.1112534841 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_130 Hb_000521_130 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000521_130--Hb_017131_010 Hb_000173_410 Hb_000173_410 Hb_000521_130--Hb_000173_410 Hb_000060_050 Hb_000060_050 Hb_000212_450--Hb_000060_050 Hb_007416_090 Hb_007416_090 Hb_000212_450--Hb_007416_090 Hb_000212_450--Hb_000140_380 Hb_000212_450--Hb_000173_410 Hb_000212_450--Hb_000252_100 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000252_100--Hb_000140_380 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_004078_040 Hb_004078_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000140_380--Hb_000454_090 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_008232_010 Hb_008232_010 Hb_017131_010--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_017131_010--Hb_011344_190 Hb_002631_010 Hb_002631_010 Hb_017131_010--Hb_002631_010 Hb_017131_010--Hb_004800_100 Hb_000928_110 Hb_000928_110 Hb_017131_010--Hb_000928_110 Hb_000173_410--Hb_000454_090 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_000173_410--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20632 6.8521 8.60625 26.3692 5.35758 9.52096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7888 14.9977 29.2131 12.9203 9.64703

CAGE analysis