Hb_000521_150

Information

Type -
Description -
Location Contig521: 85933-88792
Sequence    

Annotation

kegg
ID cic:CICLE_v10033102mg
description hypothetical protein
nr
ID XP_012092603.1
description PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DWU9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033511mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46708: 85908-88710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_150 0.0 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
2 Hb_003226_150 0.0895041081 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
3 Hb_002529_100 0.1090958968 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
4 Hb_000926_290 0.1096114487 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003581_090 0.1097710084 - - PREDICTED: galactose oxidase [Jatropha curcas]
6 Hb_092706_020 0.113480355 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
7 Hb_000045_190 0.1219674779 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
8 Hb_004116_080 0.1238787045 - - ATATH9, putative [Ricinus communis]
9 Hb_004724_140 0.1256376376 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
10 Hb_005611_010 0.1272545036 - - PREDICTED: protein prune homolog [Jatropha curcas]
11 Hb_000085_200 0.1292686231 - - ATP synthase subunit H protein [Hevea brasiliensis]
12 Hb_001902_080 0.1296488208 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000412_110 0.1297946685 - - Rop4 [Hevea brasiliensis]
14 Hb_001341_130 0.1309233633 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000634_050 0.1319378316 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
16 Hb_001454_330 0.1345577555 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
17 Hb_007021_020 0.1355078612 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
18 Hb_011609_180 0.136216507 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
19 Hb_000188_130 0.1379060993 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
20 Hb_000573_070 0.1382293724 - - hypothetical protein JCGZ_14808 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_150 Hb_000521_150 Hb_003226_150 Hb_003226_150 Hb_000521_150--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000521_150--Hb_002529_100 Hb_000926_290 Hb_000926_290 Hb_000521_150--Hb_000926_290 Hb_003581_090 Hb_003581_090 Hb_000521_150--Hb_003581_090 Hb_092706_020 Hb_092706_020 Hb_000521_150--Hb_092706_020 Hb_000045_190 Hb_000045_190 Hb_000521_150--Hb_000045_190 Hb_000282_060 Hb_000282_060 Hb_003226_150--Hb_000282_060 Hb_003226_150--Hb_000926_290 Hb_006569_020 Hb_006569_020 Hb_003226_150--Hb_006569_020 Hb_003226_150--Hb_002529_100 Hb_008695_190 Hb_008695_190 Hb_003226_150--Hb_008695_190 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_000926_290--Hb_002529_100 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_000926_290--Hb_008695_190 Hb_003581_090--Hb_092706_020 Hb_002291_030 Hb_002291_030 Hb_003581_090--Hb_002291_030 Hb_002759_230 Hb_002759_230 Hb_003581_090--Hb_002759_230 Hb_003581_090--Hb_002529_100 Hb_001722_040 Hb_001722_040 Hb_003581_090--Hb_001722_040 Hb_092706_020--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_092706_020--Hb_002928_110 Hb_000085_200 Hb_000085_200 Hb_092706_020--Hb_000085_200 Hb_092706_020--Hb_000926_290 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.046 17.4615 24.3419 12.3098 37.0374 84.6264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.205 149.106 74.2124 26.6624 6.83187

CAGE analysis