Hb_000521_170

Information

Type -
Description -
Location Contig521: 101435-128355
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23710g
description hypothetical protein
nr
ID XP_012092606.1
description PREDICTED: callose synthase 1 [Jatropha curcas]
swissprot
ID Q9AUE0
description Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2
trembl
ID U5GUC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23710g PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46710: 101549-128289 , PASA_asmbl_46712: 116241-116705 , PASA_asmbl_46713: 119383-119589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_170 0.0 - - PREDICTED: callose synthase 1 [Jatropha curcas]
2 Hb_000032_310 0.0607875414 - - ring finger protein, putative [Ricinus communis]
3 Hb_000640_130 0.1059568728 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
4 Hb_001416_020 0.1067680214 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
5 Hb_000932_070 0.1257993285 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
6 Hb_011828_030 0.1261243623 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
7 Hb_011671_230 0.1273629489 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006185_020 0.1293360178 - - PREDICTED: midasin [Jatropha curcas]
9 Hb_065500_030 0.134573116 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
10 Hb_000599_130 0.1360184684 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
11 Hb_000283_150 0.1379344886 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_005143_030 0.1383099831 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
13 Hb_000976_040 0.1383309175 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
14 Hb_001989_020 0.1391347911 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
15 Hb_003157_010 0.1402533075 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_009028_030 0.1403700947 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
17 Hb_000046_180 0.1411642479 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
18 Hb_028487_010 0.1426228882 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
19 Hb_000768_180 0.1428135089 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
20 Hb_143986_010 0.144269712 - - PREDICTED: beta-galactosidase [Jatropha curcas]

Gene co-expression network

sample Hb_000521_170 Hb_000521_170 Hb_000032_310 Hb_000032_310 Hb_000521_170--Hb_000032_310 Hb_000640_130 Hb_000640_130 Hb_000521_170--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_000521_170--Hb_001416_020 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_006185_020 Hb_006185_020 Hb_000032_310--Hb_006185_020 Hb_000808_070 Hb_000808_070 Hb_000032_310--Hb_000808_070 Hb_003157_010 Hb_003157_010 Hb_000032_310--Hb_003157_010 Hb_144824_010 Hb_144824_010 Hb_000032_310--Hb_144824_010 Hb_001989_020 Hb_001989_020 Hb_000032_310--Hb_001989_020 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_000640_130--Hb_001416_020 Hb_000976_040 Hb_000976_040 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_011716_090 Hb_011716_090 Hb_000640_130--Hb_011716_090 Hb_000283_150 Hb_000283_150 Hb_001416_020--Hb_000283_150 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_005143_030 Hb_005143_030 Hb_001416_020--Hb_005143_030 Hb_001416_020--Hb_011716_090 Hb_006683_040 Hb_006683_040 Hb_000932_070--Hb_006683_040 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000340_110 Hb_000340_110 Hb_000932_070--Hb_000340_110 Hb_018301_010 Hb_018301_010 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010 Hb_001699_280 Hb_001699_280 Hb_011828_030--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_011828_030--Hb_000105_040 Hb_011947_050 Hb_011947_050 Hb_011828_030--Hb_011947_050 Hb_000069_410 Hb_000069_410 Hb_011828_030--Hb_000069_410 Hb_000836_020 Hb_000836_020 Hb_011828_030--Hb_000836_020 Hb_003581_170 Hb_003581_170 Hb_011828_030--Hb_003581_170 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_002784_010 Hb_002784_010 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7169 101.964 12.488 26.1641 60.0012 52.8557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.948 10.6579 10.9932 68.3932 22.36

CAGE analysis