Hb_000521_190

Information

Type desease resistance
Description Gene Name: TIR
Location Contig521: 138825-142940
Sequence    

Annotation

kegg
ID vvi:100251718
description TMV resistance protein N-like
nr
ID KDP24760.1
description hypothetical protein JCGZ_25500 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JXP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_190 0.0 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
2 Hb_001007_090 0.1235015339 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
3 Hb_176472_020 0.1719726027 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000866_430 0.1726421428 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
5 Hb_004586_310 0.1884873191 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002151_130 0.1944810344 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
7 Hb_116420_050 0.2003902952 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
8 Hb_008878_010 0.2035032407 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
9 Hb_000134_260 0.2040187507 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_008115_030 0.205304786 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
11 Hb_000577_050 0.2066784379 - - -
12 Hb_002374_200 0.2078249134 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
13 Hb_089114_010 0.2080744478 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
14 Hb_002007_070 0.2084188726 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
15 Hb_000162_130 0.2086411145 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007163_080 0.2109285567 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
17 Hb_000185_230 0.212555618 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_001022_020 0.2143293167 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
19 Hb_002217_190 0.2145682678 - - invertase [Hevea brasiliensis]
20 Hb_004970_070 0.2172575607 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]

Gene co-expression network

sample Hb_000521_190 Hb_000521_190 Hb_001007_090 Hb_001007_090 Hb_000521_190--Hb_001007_090 Hb_176472_020 Hb_176472_020 Hb_000521_190--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_000521_190--Hb_000866_430 Hb_004586_310 Hb_004586_310 Hb_000521_190--Hb_004586_310 Hb_002151_130 Hb_002151_130 Hb_000521_190--Hb_002151_130 Hb_116420_050 Hb_116420_050 Hb_000521_190--Hb_116420_050 Hb_008878_010 Hb_008878_010 Hb_001007_090--Hb_008878_010 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_001007_090--Hb_176472_020 Hb_001007_090--Hb_000866_430 Hb_001007_090--Hb_116420_050 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_007919_070 Hb_007919_070 Hb_000866_430--Hb_007919_070 Hb_027065_010 Hb_027065_010 Hb_000866_430--Hb_027065_010 Hb_000866_430--Hb_116420_050 Hb_000251_170 Hb_000251_170 Hb_000866_430--Hb_000251_170 Hb_155896_010 Hb_155896_010 Hb_000866_430--Hb_155896_010 Hb_005686_100 Hb_005686_100 Hb_004586_310--Hb_005686_100 Hb_114292_010 Hb_114292_010 Hb_004586_310--Hb_114292_010 Hb_005694_070 Hb_005694_070 Hb_004586_310--Hb_005694_070 Hb_004586_310--Hb_001007_090 Hb_001143_200 Hb_001143_200 Hb_004586_310--Hb_001143_200 Hb_002221_010 Hb_002221_010 Hb_004586_310--Hb_002221_010 Hb_004586_130 Hb_004586_130 Hb_002151_130--Hb_004586_130 Hb_124677_020 Hb_124677_020 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_002151_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_002151_130--Hb_002876_070 Hb_116420_050--Hb_027065_010 Hb_127372_010 Hb_127372_010 Hb_116420_050--Hb_127372_010 Hb_003207_220 Hb_003207_220 Hb_116420_050--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_116420_050--Hb_000042_020 Hb_116420_050--Hb_007919_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0257561 0.376372 0.854819 0.138613 0.0159241 0.00749197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0722101 0.0568209 0 0.022567 0.0301811

CAGE analysis