Hb_000521_240

Information

Type -
Description -
Location Contig521: 178508-184012
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23690g
description hydroxyproline-rich glycoprotein
nr
ID XP_012092613.1
description PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05272 PE=4 SV=1
Gene Ontology
ID GO:0017053
description hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46717: 178573-181660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_240 0.0 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
2 Hb_001635_190 0.0520318693 - - RNA m5u methyltransferase, putative [Ricinus communis]
3 Hb_002471_090 0.0605746885 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
4 Hb_000917_230 0.0725566247 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
5 Hb_001716_040 0.0793492509 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
6 Hb_010068_080 0.0799300847 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
7 Hb_011218_090 0.08219559 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
8 Hb_004435_030 0.0828823574 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
9 Hb_189216_010 0.0839049981 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_001699_220 0.0850940596 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
11 Hb_050847_050 0.0854200068 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
12 Hb_004157_050 0.0854432407 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
13 Hb_009296_070 0.0854622807 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
14 Hb_112198_010 0.0865574754 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
15 Hb_000029_140 0.0866375898 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
16 Hb_004781_010 0.0883228013 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
17 Hb_023771_010 0.0901541465 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_000173_470 0.0902045892 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
19 Hb_000699_150 0.0905557257 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
20 Hb_000392_420 0.0907451561 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_240 Hb_000521_240 Hb_001635_190 Hb_001635_190 Hb_000521_240--Hb_001635_190 Hb_002471_090 Hb_002471_090 Hb_000521_240--Hb_002471_090 Hb_000917_230 Hb_000917_230 Hb_000521_240--Hb_000917_230 Hb_001716_040 Hb_001716_040 Hb_000521_240--Hb_001716_040 Hb_010068_080 Hb_010068_080 Hb_000521_240--Hb_010068_080 Hb_011218_090 Hb_011218_090 Hb_000521_240--Hb_011218_090 Hb_001635_190--Hb_002471_090 Hb_001635_190--Hb_011218_090 Hb_002119_130 Hb_002119_130 Hb_001635_190--Hb_002119_130 Hb_001635_190--Hb_010068_080 Hb_002007_080 Hb_002007_080 Hb_001635_190--Hb_002007_080 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_011218_090--Hb_000890_150 Hb_000049_210 Hb_000049_210 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69567 6.71689 5.86371 5.89906 2.18858 3.14077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.02404 6.97244 5.75042 6.62464 6.69132

CAGE analysis