Hb_000521_270

Information

Type -
Description -
Location Contig521: 205762-207382
Sequence    

Annotation

kegg
ID rcu:RCOM_1771670
description hypothetical protein
nr
ID XP_012092617.1
description PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JCC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05276 PE=4 SV=1
Gene Ontology
ID GO:0003677
description emsy n terminus plant tudor-like domains-containing protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_270 0.0 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
2 Hb_005731_120 0.092829527 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
3 Hb_000236_310 0.1103265103 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
4 Hb_000038_080 0.1110494555 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
5 Hb_062007_010 0.111563399 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
6 Hb_146109_010 0.1116465265 - - conserved hypothetical protein [Ricinus communis]
7 Hb_099878_030 0.1164120673 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
8 Hb_002235_170 0.1178767825 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
9 Hb_005228_130 0.1212184156 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_002662_020 0.121292271 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
11 Hb_000785_080 0.1224255495 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
12 Hb_000640_120 0.1240195794 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
13 Hb_000083_160 0.1252028351 - - Cell division cycle protein, putative [Ricinus communis]
14 Hb_162603_010 0.1255756885 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_001492_020 0.1315382491 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
16 Hb_000116_410 0.1318231423 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
17 Hb_004143_040 0.1318628884 - - argininosuccinate lyase, putative [Ricinus communis]
18 Hb_007026_040 0.1320978371 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
19 Hb_000270_030 0.1330179805 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
20 Hb_000271_090 0.1331075858 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000521_270 Hb_000521_270 Hb_005731_120 Hb_005731_120 Hb_000521_270--Hb_005731_120 Hb_000236_310 Hb_000236_310 Hb_000521_270--Hb_000236_310 Hb_000038_080 Hb_000038_080 Hb_000521_270--Hb_000038_080 Hb_062007_010 Hb_062007_010 Hb_000521_270--Hb_062007_010 Hb_146109_010 Hb_146109_010 Hb_000521_270--Hb_146109_010 Hb_099878_030 Hb_099878_030 Hb_000521_270--Hb_099878_030 Hb_144528_010 Hb_144528_010 Hb_005731_120--Hb_144528_010 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005291_030 Hb_005291_030 Hb_005731_120--Hb_005291_030 Hb_005914_080 Hb_005914_080 Hb_005731_120--Hb_005914_080 Hb_000031_220 Hb_000031_220 Hb_005731_120--Hb_000031_220 Hb_020665_040 Hb_020665_040 Hb_005731_120--Hb_020665_040 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_002600_140 Hb_002600_140 Hb_000236_310--Hb_002600_140 Hb_000038_080--Hb_000236_310 Hb_000038_080--Hb_005731_120 Hb_000785_080 Hb_000785_080 Hb_000038_080--Hb_000785_080 Hb_004934_070 Hb_004934_070 Hb_000038_080--Hb_004934_070 Hb_000038_080--Hb_000031_220 Hb_000038_080--Hb_099878_030 Hb_002667_060 Hb_002667_060 Hb_062007_010--Hb_002667_060 Hb_002391_210 Hb_002391_210 Hb_062007_010--Hb_002391_210 Hb_003253_050 Hb_003253_050 Hb_062007_010--Hb_003253_050 Hb_062007_010--Hb_146109_010 Hb_004143_040 Hb_004143_040 Hb_062007_010--Hb_004143_040 Hb_022400_010 Hb_022400_010 Hb_146109_010--Hb_022400_010 Hb_004602_040 Hb_004602_040 Hb_146109_010--Hb_004602_040 Hb_013399_070 Hb_013399_070 Hb_146109_010--Hb_013399_070 Hb_031284_040 Hb_031284_040 Hb_146109_010--Hb_031284_040 Hb_004117_310 Hb_004117_310 Hb_146109_010--Hb_004117_310 Hb_146109_010--Hb_000236_310 Hb_003940_040 Hb_003940_040 Hb_099878_030--Hb_003940_040 Hb_000140_280 Hb_000140_280 Hb_099878_030--Hb_000140_280 Hb_000159_090 Hb_000159_090 Hb_099878_030--Hb_000159_090 Hb_000429_150 Hb_000429_150 Hb_099878_030--Hb_000429_150 Hb_007638_030 Hb_007638_030 Hb_099878_030--Hb_007638_030 Hb_162603_010 Hb_162603_010 Hb_099878_030--Hb_162603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9971 48.3749 13.2539 53.6599 22.2516 93.92
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4363 33.2701 24.9692 63.7517 31.368

CAGE analysis