Hb_000521_290

Information

Type -
Description -
Location Contig521: 213501-214631
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23530g
description hypothetical protein
nr
ID XP_006369448.1
description hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
swissprot
ID Q9XID3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=2 SV=1
trembl
ID U5GWN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23530g PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46727: 213333-213858 , PASA_asmbl_46728: 213873-215806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_290 0.0 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
2 Hb_002085_070 0.0822591804 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000002_100 0.0923528582 - - phosphate transporter [Manihot esculenta]
4 Hb_020648_020 0.1013514138 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
5 Hb_010921_060 0.1050204118 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000338_030 0.1120476494 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
7 Hb_001514_100 0.113103214 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
8 Hb_000819_010 0.113140013 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
9 Hb_000265_020 0.1144466657 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
10 Hb_000343_260 0.1223482287 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_009778_030 0.1237051651 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
12 Hb_002783_300 0.1240476908 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000146_110 0.1244839317 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
14 Hb_000579_220 0.125838859 - - transcription factor, putative [Ricinus communis]
15 Hb_000668_160 0.1261522547 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_152718_010 0.1275728839 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
17 Hb_021596_070 0.1291215711 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
18 Hb_002219_090 0.1344082912 - - protein kinase atmrk1, putative [Ricinus communis]
19 Hb_149056_010 0.1364860313 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
20 Hb_010962_030 0.138459615 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000521_290 Hb_000521_290 Hb_002085_070 Hb_002085_070 Hb_000521_290--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_000521_290--Hb_000002_100 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_010921_060 Hb_010921_060 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_001514_100 Hb_001514_100 Hb_000521_290--Hb_001514_100 Hb_002085_070--Hb_001514_100 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_012018_020 Hb_012018_020 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_000002_100--Hb_012018_020 Hb_000002_100--Hb_001514_100 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_000002_100--Hb_010921_060 Hb_002410_010 Hb_002410_010 Hb_020648_020--Hb_002410_010 Hb_020648_020--Hb_000338_030 Hb_000098_250 Hb_000098_250 Hb_020648_020--Hb_000098_250 Hb_000579_220 Hb_000579_220 Hb_020648_020--Hb_000579_220 Hb_084127_010 Hb_084127_010 Hb_020648_020--Hb_084127_010 Hb_065230_010 Hb_065230_010 Hb_020648_020--Hb_065230_010 Hb_002239_020 Hb_002239_020 Hb_010921_060--Hb_002239_020 Hb_000819_010 Hb_000819_010 Hb_010921_060--Hb_000819_010 Hb_000465_380 Hb_000465_380 Hb_010921_060--Hb_000465_380 Hb_000668_160 Hb_000668_160 Hb_010921_060--Hb_000668_160 Hb_011344_140 Hb_011344_140 Hb_010921_060--Hb_011344_140 Hb_000338_030--Hb_002410_010 Hb_008667_030 Hb_008667_030 Hb_000338_030--Hb_008667_030 Hb_000338_030--Hb_000098_250 Hb_002529_080 Hb_002529_080 Hb_000338_030--Hb_002529_080 Hb_117127_010 Hb_117127_010 Hb_000338_030--Hb_117127_010 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_001514_100--Hb_012018_020 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222259 102.17 16.8625 12.8048 0.113662 0.0177879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 35.2046 13.6107

CAGE analysis