Hb_000521_320

Information

Type -
Description -
Location Contig521: 233299-237955
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23520g
description hypothetical protein
nr
ID XP_006369447.1
description hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
swissprot
ID O43066
description Serine/threonine-protein kinase ppk30 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk30 PE=1 SV=1
trembl
ID U5GU83
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23520g PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase ddb_g0280111 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46729: 233411-234745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_320 0.0 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
2 Hb_000302_270 0.0454024096 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_000010_400 0.0677063263 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
4 Hb_004678_040 0.067897861 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
5 Hb_002950_100 0.0679863593 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
6 Hb_011995_010 0.0683085604 - - dc50, putative [Ricinus communis]
7 Hb_025645_010 0.0689877465 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_000661_290 0.0712462295 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
9 Hb_005271_220 0.0721469808 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_008511_120 0.07642314 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
11 Hb_000331_550 0.0773590389 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
12 Hb_004586_140 0.0774054452 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
13 Hb_000031_060 0.0776622802 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
14 Hb_003092_040 0.0779888565 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
15 Hb_152175_010 0.0790641079 - - Protein grpE, putative [Ricinus communis]
16 Hb_000059_330 0.0791161972 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_000185_070 0.0793931074 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000416_040 0.0808826511 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
19 Hb_002256_030 0.0813748052 - - conserved hypothetical protein [Ricinus communis]
20 Hb_036790_100 0.0817879217 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_320 Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000302_270--Hb_000010_400 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000010_400--Hb_011995_010 Hb_007813_040 Hb_007813_040 Hb_000010_400--Hb_007813_040 Hb_001926_030 Hb_001926_030 Hb_000010_400--Hb_001926_030 Hb_077562_050 Hb_077562_050 Hb_000010_400--Hb_077562_050 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_002950_100--Hb_000302_270 Hb_002950_100--Hb_000010_400 Hb_002950_100--Hb_007813_040 Hb_000031_060 Hb_000031_060 Hb_002950_100--Hb_000031_060 Hb_008246_040 Hb_008246_040 Hb_002950_100--Hb_008246_040 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_001662_070 Hb_001662_070 Hb_025645_010--Hb_001662_070 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7405 13.9475 13.9644 12.7925 14.0353 13.7171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7523 17.163 17.4239 9.481 7.65576

CAGE analysis