Hb_000522_030

Information

Type -
Description -
Location Contig522: 13837-15131
Sequence    

Annotation

kegg
ID csv:101232463
description uncharacterized LOC101232463
nr
ID CAN69344.1
description hypothetical protein VITISV_006017 [Vitis vinifera]
swissprot
ID P92519
description Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
trembl
ID A5AS72
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006017 PE=4 SV=1
Gene Ontology
ID GO:0005694
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_030 0.0 - - hypothetical protein VITISV_006017 [Vitis vinifera]
2 Hb_011931_090 0.0803763574 - - -
3 Hb_150516_010 0.0883762502 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
4 Hb_000476_030 0.0960422805 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
5 Hb_005623_060 0.1055768279 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000135_080 0.1133325464 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_000405_010 0.1185366574 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
8 Hb_014109_020 0.1185409715 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
9 Hb_000432_020 0.1187565962 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
10 Hb_005678_030 0.1196023177 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_006455_020 0.1206543 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_032733_030 0.1224792403 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
13 Hb_019654_170 0.1400927764 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
14 Hb_012528_040 0.1427808741 - - -
15 Hb_001383_080 0.1429184447 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
16 Hb_011892_010 0.1526296387 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003414_040 0.1529987897 - - hypothetical protein VITISV_016691 [Vitis vinifera]
18 Hb_007533_050 0.1548143549 - - -
19 Hb_005666_030 0.1550183416 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
20 Hb_049285_010 0.1559226983 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000522_030 Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_000522_030--Hb_011931_090 Hb_150516_010 Hb_150516_010 Hb_000522_030--Hb_150516_010 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_005623_060 Hb_005623_060 Hb_000522_030--Hb_005623_060 Hb_000135_080 Hb_000135_080 Hb_000522_030--Hb_000135_080 Hb_000405_010 Hb_000405_010 Hb_000522_030--Hb_000405_010 Hb_011931_090--Hb_000405_010 Hb_011931_090--Hb_150516_010 Hb_011931_090--Hb_005623_060 Hb_014109_020 Hb_014109_020 Hb_011931_090--Hb_014109_020 Hb_023386_030 Hb_023386_030 Hb_011931_090--Hb_023386_030 Hb_150516_010--Hb_005623_060 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_000476_030--Hb_000135_080 Hb_005678_030 Hb_005678_030 Hb_000476_030--Hb_005678_030 Hb_006455_020 Hb_006455_020 Hb_000476_030--Hb_006455_020 Hb_005029_030 Hb_005029_030 Hb_000476_030--Hb_005029_030 Hb_000858_050 Hb_000858_050 Hb_000476_030--Hb_000858_050 Hb_000512_050 Hb_000512_050 Hb_005623_060--Hb_000512_050 Hb_003169_040 Hb_003169_040 Hb_005623_060--Hb_003169_040 Hb_080033_020 Hb_080033_020 Hb_005623_060--Hb_080033_020 Hb_005623_060--Hb_014109_020 Hb_000135_080--Hb_005678_030 Hb_001001_130 Hb_001001_130 Hb_000135_080--Hb_001001_130 Hb_001856_290 Hb_001856_290 Hb_000135_080--Hb_001856_290 Hb_012528_040 Hb_012528_040 Hb_000135_080--Hb_012528_040 Hb_000135_080--Hb_000858_050 Hb_054127_020 Hb_054127_020 Hb_000405_010--Hb_054127_020 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0766832 0.131779 0.0129141 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196589 1.59072

CAGE analysis