Hb_000522_070

Information

Type -
Description -
Location Contig522: 38622-40190
Sequence    

Annotation

kegg
ID rcu:RCOM_0491950
description hypothetical protein
nr
ID XP_012069798.1
description PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02299 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46837: 39272-40466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_070 0.0 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
2 Hb_000367_240 0.194674797 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
3 Hb_001454_180 0.2038624138 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
4 Hb_000748_100 0.2063420966 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
5 Hb_007558_110 0.2130762339 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
6 Hb_000739_250 0.2174762882 - - PREDICTED: uncharacterized protein LOC105120821 [Populus euphratica]
7 Hb_000083_110 0.2203506787 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
8 Hb_000960_120 0.2211190431 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
9 Hb_001279_050 0.2223000898 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
10 Hb_002486_090 0.226385185 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
11 Hb_001277_120 0.2275641329 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
12 Hb_000365_210 0.2287800044 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
13 Hb_004963_020 0.2296983461 - - PREDICTED: patellin-4 [Populus euphratica]
14 Hb_087793_010 0.2301768043 - - conserved hypothetical protein [Ricinus communis]
15 Hb_114292_010 0.2307157456 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002307_040 0.2322525538 - - DNA binding protein, putative [Ricinus communis]
17 Hb_144649_010 0.2339449541 - - 60S ribosomal protein L34A [Hevea brasiliensis]
18 Hb_000441_210 0.2343283626 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
19 Hb_001761_010 0.2355603712 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
20 Hb_005116_030 0.2369799855 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000522_070 Hb_000522_070 Hb_000367_240 Hb_000367_240 Hb_000522_070--Hb_000367_240 Hb_001454_180 Hb_001454_180 Hb_000522_070--Hb_001454_180 Hb_000748_100 Hb_000748_100 Hb_000522_070--Hb_000748_100 Hb_007558_110 Hb_007558_110 Hb_000522_070--Hb_007558_110 Hb_000739_250 Hb_000739_250 Hb_000522_070--Hb_000739_250 Hb_000083_110 Hb_000083_110 Hb_000522_070--Hb_000083_110 Hb_011360_130 Hb_011360_130 Hb_000367_240--Hb_011360_130 Hb_000367_240--Hb_000748_100 Hb_001279_050 Hb_001279_050 Hb_000367_240--Hb_001279_050 Hb_114292_010 Hb_114292_010 Hb_000367_240--Hb_114292_010 Hb_000367_240--Hb_001454_180 Hb_000347_160 Hb_000347_160 Hb_000367_240--Hb_000347_160 Hb_004963_020 Hb_004963_020 Hb_001454_180--Hb_004963_020 Hb_010021_060 Hb_010021_060 Hb_001454_180--Hb_010021_060 Hb_000441_210 Hb_000441_210 Hb_001454_180--Hb_000441_210 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_001454_180--Hb_007558_110 Hb_002473_030 Hb_002473_030 Hb_001454_180--Hb_002473_030 Hb_004800_030 Hb_004800_030 Hb_000748_100--Hb_004800_030 Hb_000748_100--Hb_001279_050 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_000748_100--Hb_001454_180 Hb_000748_100--Hb_004963_020 Hb_001864_040 Hb_001864_040 Hb_007558_110--Hb_001864_040 Hb_000035_190 Hb_000035_190 Hb_007558_110--Hb_000035_190 Hb_162378_020 Hb_162378_020 Hb_007558_110--Hb_162378_020 Hb_007558_110--Hb_004963_020 Hb_011063_030 Hb_011063_030 Hb_007558_110--Hb_011063_030 Hb_000413_220 Hb_000413_220 Hb_000739_250--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_000739_250--Hb_000574_180 Hb_000256_170 Hb_000256_170 Hb_000739_250--Hb_000256_170 Hb_000668_190 Hb_000668_190 Hb_000739_250--Hb_000668_190 Hb_002486_090 Hb_002486_090 Hb_000739_250--Hb_002486_090 Hb_005141_020 Hb_005141_020 Hb_000739_250--Hb_005141_020 Hb_103339_010 Hb_103339_010 Hb_000083_110--Hb_103339_010 Hb_000083_110--Hb_001279_050 Hb_002307_040 Hb_002307_040 Hb_000083_110--Hb_002307_040 Hb_028487_120 Hb_028487_120 Hb_000083_110--Hb_028487_120 Hb_000960_120 Hb_000960_120 Hb_000083_110--Hb_000960_120 Hb_002613_030 Hb_002613_030 Hb_000083_110--Hb_002613_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0624969 0.107686 1.73597 0.47599 0.0630726 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146731 0 0 0.0481757 0

CAGE analysis