Hb_000522_080

Information

Type -
Description -
Location Contig522: 49022-51472
Sequence    

Annotation

kegg
ID rcu:RCOM_0491960
description hypothetical protein
nr
ID XP_012069797.1
description PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L727
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46838: 48938-51481 , PASA_asmbl_46839: 48946-51444
cDNA
(Sanger)
(ID:Location)		 002_H01.ab1: 48946-51350 , 011_L13.ab1: 48946-51408 , 029_H24.ab1: 48946-51182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_080 0.0 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
2 Hb_004242_080 0.0762214841 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
3 Hb_001722_100 0.0790364593 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021650_030 0.0833819489 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
5 Hb_014720_080 0.0854057174 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
6 Hb_000091_090 0.0931897617 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
7 Hb_004223_280 0.0941752193 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
8 Hb_003020_230 0.0949394101 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
9 Hb_001257_080 0.0954023001 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000877_060 0.0959531874 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
11 Hb_000720_120 0.0968427598 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
12 Hb_011828_020 0.097431693 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
13 Hb_000638_080 0.0975538573 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
14 Hb_001442_020 0.0980415461 - - unknown [Populus trichocarpa]
15 Hb_000987_120 0.0986334318 - - PREDICTED: protein SIEL [Jatropha curcas]
16 Hb_011689_040 0.098825516 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
17 Hb_000613_140 0.1003146406 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_000696_340 0.1009885304 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
19 Hb_002963_010 0.1015328084 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
20 Hb_022216_020 0.1028221201 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000522_080 Hb_000522_080 Hb_004242_080 Hb_004242_080 Hb_000522_080--Hb_004242_080 Hb_001722_100 Hb_001722_100 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_014720_080 Hb_014720_080 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280 Hb_000163_200 Hb_000163_200 Hb_004242_080--Hb_000163_200 Hb_034350_010 Hb_034350_010 Hb_004242_080--Hb_034350_010 Hb_001221_410 Hb_001221_410 Hb_004242_080--Hb_001221_410 Hb_000987_120 Hb_000987_120 Hb_004242_080--Hb_000987_120 Hb_070986_010 Hb_070986_010 Hb_004242_080--Hb_070986_010 Hb_001722_100--Hb_014720_080 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_021650_030--Hb_000091_090 Hb_002411_200 Hb_002411_200 Hb_021650_030--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_021650_030--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_002411_200 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.316 169.248 72.9287 93.8232 285.042 265.916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
566.122 437.603 302.193 206.534 43.005

CAGE analysis