Hb_000522_090

Information

Type -
Description -
Location Contig522: 52840-68625
Sequence    

Annotation

kegg
ID rcu:RCOM_0491970
description hypothetical protein
nr
ID XP_009589521.1
description PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
swissprot
ID Q9LSW2
description Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1
trembl
ID A0A068TT69
description Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00026261001 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_090 0.0 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
2 Hb_000803_300 0.0573874541 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_002097_090 0.0653394951 - - Splicing factor 3A subunit, putative [Ricinus communis]
4 Hb_005245_130 0.0707718127 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
5 Hb_004934_090 0.0726208944 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
6 Hb_005977_090 0.072763238 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
7 Hb_002030_030 0.07373164 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
8 Hb_009620_040 0.0750830254 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
9 Hb_003728_030 0.0756941808 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_026099_010 0.0781470247 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
11 Hb_000429_200 0.0785751813 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
12 Hb_001014_010 0.0791617586 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
13 Hb_001866_110 0.0793499902 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
14 Hb_008695_120 0.0807344217 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
15 Hb_000236_370 0.0817510911 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
16 Hb_003406_010 0.0828661934 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
17 Hb_000956_030 0.0833010758 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
18 Hb_000703_080 0.0836999329 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
19 Hb_003581_120 0.0851710772 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
20 Hb_001638_250 0.0860028477 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]

Gene co-expression network

sample Hb_000522_090 Hb_000522_090 Hb_000803_300 Hb_000803_300 Hb_000522_090--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000522_090--Hb_002097_090 Hb_005245_130 Hb_005245_130 Hb_000522_090--Hb_005245_130 Hb_004934_090 Hb_004934_090 Hb_000522_090--Hb_004934_090 Hb_005977_090 Hb_005977_090 Hb_000522_090--Hb_005977_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_004934_090--Hb_004096_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_028487_110 Hb_028487_110 Hb_005977_090--Hb_028487_110 Hb_001638_250 Hb_001638_250 Hb_005977_090--Hb_001638_250 Hb_001866_110 Hb_001866_110 Hb_005977_090--Hb_001866_110 Hb_007586_030 Hb_007586_030 Hb_005977_090--Hb_007586_030 Hb_005977_090--Hb_000803_300 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5235 8.59282 4.94652 4.53628 18.942 21.1047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2798 8.49733 8.87085 7.49292 5.06664

CAGE analysis