Hb_000522_120

Information

Type -
Description -
Location Contig522: 81227-81574
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16470g
description hypothetical protein
nr
ID XP_006379877.1
description hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
swissprot
ID Q6NN02
description Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1
trembl
ID A9P9X0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16470g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46842: 81160-81729
cDNA
(Sanger)
(ID:Location)		 018_P02.ab1: 81165-81613 , 039_D04.ab1: 81160-81625

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_120 0.0 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
2 Hb_141990_050 0.0897809906 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
3 Hb_031862_150 0.0975150732 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_007328_010 0.0985996973 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
5 Hb_005643_020 0.1001161276 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
6 Hb_005588_010 0.1038323812 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
7 Hb_022768_010 0.1051315498 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
8 Hb_000016_220 0.1117312839 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
9 Hb_004157_080 0.1121186649 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
10 Hb_055706_010 0.1175794076 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
11 Hb_002849_030 0.1194693929 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
12 Hb_073870_020 0.1254679038 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
13 Hb_001405_260 0.1260205997 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
14 Hb_005946_190 0.1268579715 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
15 Hb_048538_010 0.1337643725 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
16 Hb_147137_020 0.1340813179 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
17 Hb_027214_060 0.1349165135 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
18 Hb_009189_010 0.1357281861 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
19 Hb_000230_210 0.1373756063 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
20 Hb_000227_410 0.1392032172 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_000522_120 Hb_000522_120 Hb_141990_050 Hb_141990_050 Hb_000522_120--Hb_141990_050 Hb_031862_150 Hb_031862_150 Hb_000522_120--Hb_031862_150 Hb_007328_010 Hb_007328_010 Hb_000522_120--Hb_007328_010 Hb_005643_020 Hb_005643_020 Hb_000522_120--Hb_005643_020 Hb_005588_010 Hb_005588_010 Hb_000522_120--Hb_005588_010 Hb_022768_010 Hb_022768_010 Hb_000522_120--Hb_022768_010 Hb_141990_050--Hb_007328_010 Hb_009189_010 Hb_009189_010 Hb_141990_050--Hb_009189_010 Hb_002849_030 Hb_002849_030 Hb_141990_050--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_141990_050--Hb_073870_020 Hb_141990_050--Hb_005588_010 Hb_048538_010 Hb_048538_010 Hb_031862_150--Hb_048538_010 Hb_031862_150--Hb_022768_010 Hb_147137_020 Hb_147137_020 Hb_031862_150--Hb_147137_020 Hb_000227_410 Hb_000227_410 Hb_031862_150--Hb_000227_410 Hb_000086_600 Hb_000086_600 Hb_031862_150--Hb_000086_600 Hb_142691_010 Hb_142691_010 Hb_031862_150--Hb_142691_010 Hb_007328_010--Hb_009189_010 Hb_001677_130 Hb_001677_130 Hb_007328_010--Hb_001677_130 Hb_007328_010--Hb_002849_030 Hb_007328_010--Hb_073870_020 Hb_001405_260 Hb_001405_260 Hb_005643_020--Hb_001405_260 Hb_005643_020--Hb_005588_010 Hb_005648_030 Hb_005648_030 Hb_005643_020--Hb_005648_030 Hb_044026_010 Hb_044026_010 Hb_005643_020--Hb_044026_010 Hb_002193_050 Hb_002193_050 Hb_005643_020--Hb_002193_050 Hb_005588_010--Hb_001405_260 Hb_005588_010--Hb_005648_030 Hb_033153_010 Hb_033153_010 Hb_005588_010--Hb_033153_010 Hb_022630_010 Hb_022630_010 Hb_005588_010--Hb_022630_010 Hb_015978_040 Hb_015978_040 Hb_022768_010--Hb_015978_040 Hb_034132_010 Hb_034132_010 Hb_022768_010--Hb_034132_010 Hb_001565_050 Hb_001565_050 Hb_022768_010--Hb_001565_050 Hb_005946_190 Hb_005946_190 Hb_022768_010--Hb_005946_190 Hb_005725_180 Hb_005725_180 Hb_022768_010--Hb_005725_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99539 1134.92 147.799 56.8479 0.322782 0.513256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529339 6.24046 1.58412 19.2254 33.5985

CAGE analysis