Hb_000522_150

Information

Type -
Description -
Location Contig522: 130712-133767
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09510g
description POPTRDRAFT_653060; hypothetical protein
nr
ID XP_012087963.1
description PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25084 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd zinc finger superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46846: 130917-133744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_150 0.0 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
2 Hb_000738_020 0.0729427066 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000869_080 0.0736002868 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
4 Hb_002205_110 0.0775409006 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005271_220 0.0780536078 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
6 Hb_024958_010 0.0790561851 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
7 Hb_000010_110 0.0792006005 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
8 Hb_000028_370 0.0793205398 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
9 Hb_164010_040 0.0814305119 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_001357_150 0.0820387067 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_005116_060 0.0824772499 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
12 Hb_000270_310 0.0846294093 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
13 Hb_001359_050 0.0846308741 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005730_120 0.0861939223 - - PREDICTED: protein WHI4 [Jatropha curcas]
15 Hb_062226_130 0.0870841436 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
16 Hb_006059_040 0.087378878 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
17 Hb_002553_040 0.0877341605 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
18 Hb_000220_010 0.0886496692 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
19 Hb_168978_010 0.088914086 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
20 Hb_002028_210 0.0889408269 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]

Gene co-expression network

sample Hb_000522_150 Hb_000522_150 Hb_000738_020 Hb_000738_020 Hb_000522_150--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_000522_150--Hb_000869_080 Hb_002205_110 Hb_002205_110 Hb_000522_150--Hb_002205_110 Hb_005271_220 Hb_005271_220 Hb_000522_150--Hb_005271_220 Hb_024958_010 Hb_024958_010 Hb_000522_150--Hb_024958_010 Hb_000010_110 Hb_000010_110 Hb_000522_150--Hb_000010_110 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_012239_020 Hb_012239_020 Hb_000738_020--Hb_012239_020 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_003849_110 Hb_003849_110 Hb_000738_020--Hb_003849_110 Hb_000738_020--Hb_000869_080 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_164010_040 Hb_164010_040 Hb_000869_080--Hb_164010_040 Hb_013358_040 Hb_013358_040 Hb_000869_080--Hb_013358_040 Hb_000869_080--Hb_005162_090 Hb_000869_080--Hb_002073_200 Hb_000028_370 Hb_000028_370 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_002936_010 Hb_002936_010 Hb_024958_010--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_024958_010--Hb_001359_050 Hb_000684_380 Hb_000684_380 Hb_024958_010--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_008725_230 Hb_008725_230 Hb_024958_010--Hb_008725_230 Hb_006570_080 Hb_006570_080 Hb_024958_010--Hb_006570_080 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25825 4.33247 4.08888 4.83222 2.52914 3.00662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33193 5.39107 2.55987 2.78083 2.5585

CAGE analysis