Hb_000523_020

Information

Type -
Description -
Location Contig523: 47329-64980
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07690g
description POPTRDRAFT_817941; NC domain-containing family protein
nr
ID XP_012092907.1
description PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46890: 47339-50477 , PASA_asmbl_46892: 52072-61171 , PASA_asmbl_46893: 59760-61049 , PASA_asmbl_46894: 63012-64867
cDNA
(Sanger)
(ID:Location)		 008_B12.ab1: 63507-64866 , 009_N21.ab1: 59760-61049 , 010_D13.ab1: 47653-50428 , 023_H16.ab1: 63438-64864 , 023_K03.ab1: 63569-64868 , 025_K22.ab1: 63360-64882 , 030_M02.ab1: 63418-64864 , 036_M13.ab1: 47461-50312 , 037_F02.ab1: 52516-61171 , 046_H14.ab1: 63412-64868 , 048_N14.ab1: 63401-64867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_020 0.0 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
2 Hb_000270_400 0.0748426909 - - lipase, putative [Ricinus communis]
3 Hb_126669_010 0.0806148426 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
4 Hb_007545_210 0.1012618798 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
5 Hb_002388_060 0.1075442093 - - conserved hypothetical protein [Ricinus communis]
6 Hb_170116_010 0.1090809649 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
7 Hb_002627_060 0.1159994765 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
8 Hb_000376_150 0.1232018245 - - O-acyltransferase WSD1 [Gossypium arboreum]
9 Hb_000928_230 0.1269132529 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001780_060 0.127421866 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
11 Hb_000172_610 0.1364460755 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
12 Hb_003636_090 0.1380516746 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
13 Hb_011616_030 0.1408448574 - - -
14 Hb_000603_200 0.1421618679 - - PREDICTED: myosin-15 [Jatropha curcas]
15 Hb_095397_010 0.142796404 - - hypothetical protein 25 [Hevea brasiliensis]
16 Hb_017111_010 0.1438315943 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
17 Hb_004545_150 0.1450972447 - - PREDICTED: paramyosin [Jatropha curcas]
18 Hb_001454_390 0.1457602788 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
19 Hb_004254_040 0.1458264432 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
20 Hb_043637_010 0.1519770671 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000523_020 Hb_000523_020 Hb_000270_400 Hb_000270_400 Hb_000523_020--Hb_000270_400 Hb_126669_010 Hb_126669_010 Hb_000523_020--Hb_126669_010 Hb_007545_210 Hb_007545_210 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_002627_060 Hb_002627_060 Hb_000523_020--Hb_002627_060 Hb_000270_400--Hb_007545_210 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_000928_230 Hb_000928_230 Hb_126669_010--Hb_000928_230 Hb_126669_010--Hb_002627_060 Hb_126669_010--Hb_000172_610 Hb_000376_150 Hb_000376_150 Hb_126669_010--Hb_000376_150 Hb_007545_210--Hb_002388_060 Hb_000416_100 Hb_000416_100 Hb_007545_210--Hb_000416_100 Hb_007545_210--Hb_002627_060 Hb_007545_210--Hb_000376_150 Hb_002388_060--Hb_000416_100 Hb_002388_060--Hb_000270_400 Hb_032264_130 Hb_032264_130 Hb_002388_060--Hb_032264_130 Hb_001454_390 Hb_001454_390 Hb_002388_060--Hb_001454_390 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_170116_010--Hb_001454_390 Hb_002875_090 Hb_002875_090 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_002627_060--Hb_000172_610 Hb_000155_080 Hb_000155_080 Hb_002627_060--Hb_000155_080 Hb_009193_130 Hb_009193_130 Hb_002627_060--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002627_060--Hb_098315_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4525.2 44.1425 12.2374 43.1292 1999.8 1959.6
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1523.89 554.167 830.769 82.5379 11.8045

CAGE analysis