Hb_000523_040

Information

Type -
Description -
Location Contig523: 78501-87275
Sequence    

Annotation

kegg
ID rcu:RCOM_0764880
description Auxin response factor, putative
nr
ID XP_012074114.1
description PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
swissprot
ID Q9FGV1
description Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2
trembl
ID A0A067KWZ2
description Auxin response factor OS=Jatropha curcas GN=JCGZ_09784 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46896: 78098-78814 , PASA_asmbl_46897: 78815-87168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_040 0.0 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
2 Hb_006586_050 0.0627749784 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
3 Hb_000256_190 0.0839101114 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
4 Hb_080313_010 0.0897421811 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
5 Hb_000521_260 0.08976405 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_000366_120 0.0926315229 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
7 Hb_002304_090 0.0954976343 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
8 Hb_000538_100 0.0958771881 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001135_130 0.0962652511 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
10 Hb_004310_020 0.0976698373 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
11 Hb_014497_050 0.0979257004 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
12 Hb_017491_030 0.0991706379 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
13 Hb_012023_020 0.0995644497 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
14 Hb_003935_030 0.1004092299 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
15 Hb_164010_060 0.1007853844 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
16 Hb_010712_030 0.1011158517 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001347_040 0.1020114389 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]
18 Hb_000011_190 0.1027635505 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
19 Hb_007059_010 0.1029308554 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
20 Hb_001054_020 0.1034232457 - - glutamine synthetase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000523_040 Hb_000523_040 Hb_006586_050 Hb_006586_050 Hb_000523_040--Hb_006586_050 Hb_000256_190 Hb_000256_190 Hb_000523_040--Hb_000256_190 Hb_080313_010 Hb_080313_010 Hb_000523_040--Hb_080313_010 Hb_000521_260 Hb_000521_260 Hb_000523_040--Hb_000521_260 Hb_000366_120 Hb_000366_120 Hb_000523_040--Hb_000366_120 Hb_002304_090 Hb_002304_090 Hb_000523_040--Hb_002304_090 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_000059_210 Hb_000059_210 Hb_006586_050--Hb_000059_210 Hb_006586_050--Hb_000521_260 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_006916_040 Hb_006916_040 Hb_000256_190--Hb_006916_040 Hb_001347_040 Hb_001347_040 Hb_000256_190--Hb_001347_040 Hb_004631_180 Hb_004631_180 Hb_000256_190--Hb_004631_180 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003124_220 Hb_003124_220 Hb_000256_190--Hb_003124_220 Hb_003549_150 Hb_003549_150 Hb_000256_190--Hb_003549_150 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_001140_350 Hb_001140_350 Hb_080313_010--Hb_001140_350 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_003747_010 Hb_003747_010 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_075481_030 Hb_075481_030 Hb_000521_260--Hb_075481_030 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_009627_010 Hb_009627_010 Hb_002304_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_002304_090--Hb_000510_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7509 26.4028 11.5929 22.1738 28.9133 32.0698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0975 14.1694 17.5594 17.4309 5.24662

CAGE analysis