Hb_000523_050

Information

Type -
Description -
Location Contig523: 89581-93874
Sequence    

Annotation

kegg
ID rcu:RCOM_0764870
description microsomal glutathione s-transferase, putative (EC:2.5.1.18)
nr
ID XP_002526194.1
description microsomal glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9CPU4
description Microsomal glutathione S-transferase 3 OS=Mus musculus GN=Mgst3 PE=1 SV=1
trembl
ID B9SJM5
description Microsomal glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0764870 PE=4 SV=1
Gene Ontology
ID GO:0005773
description microsomal glutathione s-transferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46899: 89560-93846
cDNA
(Sanger)
(ID:Location)		 019_I23.ab1: 89687-93807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_050 0.0 - - microsomal glutathione s-transferase, putative [Ricinus communis]
2 Hb_002078_020 0.0569632314 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
3 Hb_000395_020 0.0603148826 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
4 Hb_003813_130 0.0665738079 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
5 Hb_011930_160 0.0726346918 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
6 Hb_000538_100 0.0728574821 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_630 0.0733710419 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
8 Hb_003813_040 0.0749314683 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
9 Hb_007592_030 0.0761229957 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_006827_020 0.077302714 - - conserved hypothetical protein [Ricinus communis]
11 Hb_103012_010 0.0780692107 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
12 Hb_004837_190 0.0784134247 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
13 Hb_003163_020 0.0788750325 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
14 Hb_000853_230 0.0798386354 - - syntaxin, putative [Ricinus communis]
15 Hb_006620_020 0.0807702219 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_011174_090 0.0809984038 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
17 Hb_001172_010 0.0814672952 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_004994_040 0.0845402395 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_000390_180 0.085901812 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
20 Hb_007520_030 0.0870882019 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]

Gene co-expression network

sample Hb_000523_050 Hb_000523_050 Hb_002078_020 Hb_002078_020 Hb_000523_050--Hb_002078_020 Hb_000395_020 Hb_000395_020 Hb_000523_050--Hb_000395_020 Hb_003813_130 Hb_003813_130 Hb_000523_050--Hb_003813_130 Hb_011930_160 Hb_011930_160 Hb_000523_050--Hb_011930_160 Hb_000538_100 Hb_000538_100 Hb_000523_050--Hb_000538_100 Hb_000270_630 Hb_000270_630 Hb_000523_050--Hb_000270_630 Hb_000853_230 Hb_000853_230 Hb_002078_020--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_002078_020--Hb_001926_030 Hb_004055_150 Hb_004055_150 Hb_002078_020--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030 Hb_000868_060 Hb_000868_060 Hb_000395_020--Hb_000868_060 Hb_001040_040 Hb_001040_040 Hb_000395_020--Hb_001040_040 Hb_003813_040 Hb_003813_040 Hb_000395_020--Hb_003813_040 Hb_001050_010 Hb_001050_010 Hb_000395_020--Hb_001050_010 Hb_000395_020--Hb_002078_020 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_003813_130--Hb_011930_160 Hb_103012_010 Hb_103012_010 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_004055_030 Hb_004055_030 Hb_003813_130--Hb_004055_030 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_011930_160--Hb_001946_010 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_000193_190 Hb_000193_190 Hb_011930_160--Hb_000193_190 Hb_011930_160--Hb_103012_010 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_000270_630--Hb_103012_010 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
253.177 124.759 167.374 163.356 290.177 227.455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.098 107.076 163.998 178.548 83.112

CAGE analysis