Hb_000523_100

Information

Type -
Description -
Location Contig523: 133307-133513
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07440g
description POPTRDRAFT_714282; hypothetical protein
nr
ID XP_011011362.1
description PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
swissprot
ID Q9M8R4
description Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1
trembl
ID B9H3J4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s07440g PE=4 SV=2
Gene Ontology
ID GO:0008233
description protein dj-1 homolog d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46902: 130235-134231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_100 0.0 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
2 Hb_088065_010 0.119892891 - - hypothetical protein glysoja_007934 [Glycine soja]
3 Hb_126112_010 0.1563304045 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_088774_010 0.1630879599 - - -
5 Hb_000295_090 0.1827973026 - - Clathrin light chain 2 [Glycine soja]
6 Hb_000003_180 0.1856235687 - - conserved hypothetical protein [Ricinus communis]
7 Hb_071923_010 0.1973633641 - - -
8 Hb_001235_060 0.1974317458 - - -
9 Hb_001385_090 0.1994202744 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
10 Hb_003581_010 0.2071773114 - - hypothetical protein VITISV_004687 [Vitis vinifera]
11 Hb_001722_020 0.2071789835 - - -
12 Hb_000248_010 0.2116452349 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
13 Hb_002249_110 0.2191313377 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
14 Hb_007765_010 0.2204083104 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005933_010 0.2206952495 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_000025_100 0.2233795029 - - -
17 Hb_073559_010 0.224094254 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
18 Hb_001231_070 0.2277568649 - - -
19 Hb_130134_020 0.2320104848 - - -
20 Hb_059952_010 0.2353942177 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000523_100 Hb_000523_100 Hb_088065_010 Hb_088065_010 Hb_000523_100--Hb_088065_010 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_088774_010 Hb_088774_010 Hb_000523_100--Hb_088774_010 Hb_000295_090 Hb_000295_090 Hb_000523_100--Hb_000295_090 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_071923_010 Hb_071923_010 Hb_000523_100--Hb_071923_010 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_000248_010 Hb_000248_010 Hb_088065_010--Hb_000248_010 Hb_088065_010--Hb_088774_010 Hb_005965_010 Hb_005965_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_003061_010 Hb_003061_010 Hb_126112_010--Hb_003061_010 Hb_000025_100 Hb_000025_100 Hb_126112_010--Hb_000025_100 Hb_156526_010 Hb_156526_010 Hb_126112_010--Hb_156526_010 Hb_021888_110 Hb_021888_110 Hb_126112_010--Hb_021888_110 Hb_003581_010 Hb_003581_010 Hb_126112_010--Hb_003581_010 Hb_001722_020 Hb_001722_020 Hb_088774_010--Hb_001722_020 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_088774_010--Hb_071923_010 Hb_088774_010--Hb_000248_010 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_115578_010 Hb_115578_010 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000617_170 Hb_000617_170 Hb_000003_180--Hb_000617_170 Hb_000976_030 Hb_000976_030 Hb_000003_180--Hb_000976_030 Hb_000003_180--Hb_088065_010 Hb_000003_180--Hb_003581_010 Hb_000003_180--Hb_130134_020 Hb_071923_010--Hb_001722_020 Hb_071923_010--Hb_002249_110 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.4316 14.6163 12.3387 29.954 11.8742 255.122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.377 19.2476 1.12179 4.72115 5.81738

CAGE analysis