Hb_000525_020

Information

Type -
Description -
Location Contig525: 10928-18068
Sequence    

Annotation

kegg
ID rcu:RCOM_0851750
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002517367.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O48788
description Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1
trembl
ID B9RUC2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0851750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at2g26730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46958: 17315-17797 , PASA_asmbl_46959: 14210-18109 , PASA_asmbl_46960: 15838-15975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000331_470 0.0726769968 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
3 Hb_004871_020 0.0843075055 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
4 Hb_091433_020 0.0858783549 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
5 Hb_001863_430 0.0898515523 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
6 Hb_000684_270 0.0903645571 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
7 Hb_003787_010 0.0915385115 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
8 Hb_001616_040 0.091654408 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
9 Hb_008771_030 0.091811924 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
10 Hb_000217_030 0.0937432682 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
11 Hb_153544_010 0.0944042702 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
12 Hb_001476_080 0.0946467811 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
13 Hb_033642_080 0.0964160077 - - V-type proton ATPase subunit E [Hevea brasiliensis]
14 Hb_004102_070 0.0969211806 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
15 Hb_009182_010 0.0970742758 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
16 Hb_000417_360 0.0979790945 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
17 Hb_007894_060 0.1005847057 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
18 Hb_006153_110 0.1011503288 - - dimethylaniline monooxygenase, putative [Ricinus communis]
19 Hb_002304_160 0.10242404 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
20 Hb_000025_620 0.1031808482 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]

Gene co-expression network

sample Hb_000525_020 Hb_000525_020 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_004871_020 Hb_004871_020 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000684_270 Hb_000684_270 Hb_000525_020--Hb_000684_270 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_153544_010 Hb_153544_010 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_002234_070 Hb_002234_070 Hb_000684_270--Hb_002234_070 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_077354_010 Hb_077354_010 Hb_000684_270--Hb_077354_010 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57937 2.70829 3.63647 3.18551 1.4258 3.26717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14803 9.9839 3.89581 4.67986 2.22785

CAGE analysis