Hb_000525_050

Information

Type -
Description -
Location Contig525: 66229-68372
Sequence    

Annotation

kegg
ID rcu:RCOM_0851790
description hypothetical protein
nr
ID XP_002517371.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I5D5
description WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1
trembl
ID B9RUC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0851790 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g40240-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46962: 66258-68365
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000525_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003411_090 0.1220679239 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
3 Hb_012244_010 0.1263392752 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
4 Hb_001399_010 0.1278049936 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001863_020 0.1323852999 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
6 Hb_004128_070 0.1471348142 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
7 Hb_029920_030 0.1491376557 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
8 Hb_000167_110 0.1504776743 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_002045_060 0.1514053299 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_046823_010 0.1545380747 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
11 Hb_000049_110 0.1572183316 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
12 Hb_004317_030 0.1573865365 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
13 Hb_000510_030 0.1579387715 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
14 Hb_000388_060 0.1590856244 - - fructokinase [Manihot esculenta]
15 Hb_005725_220 0.1608866499 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
16 Hb_004346_030 0.1615663114 - - sucrose phosphate phosphatase, putative [Ricinus communis]
17 Hb_007534_050 0.1620597518 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000317_260 0.1621678726 - - unknown [Populus trichocarpa]
19 Hb_004672_030 0.1625869565 - - proline oxidase [Manihot esculenta]
20 Hb_004644_030 0.1651121038 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000525_050 Hb_000525_050 Hb_003411_090 Hb_003411_090 Hb_000525_050--Hb_003411_090 Hb_012244_010 Hb_012244_010 Hb_000525_050--Hb_012244_010 Hb_001399_010 Hb_001399_010 Hb_000525_050--Hb_001399_010 Hb_001863_020 Hb_001863_020 Hb_000525_050--Hb_001863_020 Hb_004128_070 Hb_004128_070 Hb_000525_050--Hb_004128_070 Hb_029920_030 Hb_029920_030 Hb_000525_050--Hb_029920_030 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003266_030 Hb_003266_030 Hb_003411_090--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_003411_090--Hb_000167_110 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_001153_120 Hb_001153_120 Hb_012244_010--Hb_001153_120 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_001138_060 Hb_001138_060 Hb_001399_010--Hb_001138_060 Hb_001399_010--Hb_004128_070 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_001399_010--Hb_001863_020 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_005846_030 Hb_005846_030 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300 Hb_000816_200 Hb_000816_200 Hb_029920_030--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_005276_010 Hb_005276_010 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000164_140 Hb_000164_140 Hb_029920_030--Hb_000164_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17767 2.54431 21.8163 15.6741 1.71133 3.90105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.087 8.41697 17.3345 10.4825 29.7643

CAGE analysis