Hb_000527_010

Information

Type -
Description -
Location Contig527: 7214-16182
Sequence    

Annotation

kegg
ID rcu:RCOM_1062700
description katanin P80 subunit, putative (EC:2.7.11.7)
nr
ID XP_002521412.1
description katanin P80 subunit, putative [Ricinus communis]
swissprot
ID Q8H0T9
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
trembl
ID B9S5Z3
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Ricinus communis GN=RCOM_1062700 PE=3 SV=1
Gene Ontology
ID GO:0005874
description katanin p80 wd40 repeat-containing subunit b1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47023: 7249-16007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_010 0.0 - - katanin P80 subunit, putative [Ricinus communis]
2 Hb_012305_030 0.0677233622 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
3 Hb_008568_020 0.0725642684 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
4 Hb_004976_010 0.0756588477 - - hypothetical protein RCOM_1429110 [Ricinus communis]
5 Hb_055235_020 0.0762564644 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
6 Hb_004020_040 0.0763997981 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
7 Hb_140049_040 0.0777471975 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
8 Hb_011609_140 0.0788106604 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
9 Hb_000227_220 0.0791241708 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_000230_090 0.0797843412 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
11 Hb_000318_120 0.0798715376 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
12 Hb_032990_010 0.0802547379 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
13 Hb_000710_040 0.0804124885 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
14 Hb_002477_250 0.0815069504 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_000289_040 0.0826894009 - - Poly(A) polymerase alpha, putative [Ricinus communis]
16 Hb_001089_030 0.0829046187 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
17 Hb_008226_090 0.0841984307 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
18 Hb_000645_170 0.0848121472 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000836_410 0.084919186 - - sec10, putative [Ricinus communis]
20 Hb_000101_380 0.0850694407 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000527_010 Hb_000527_010 Hb_012305_030 Hb_012305_030 Hb_000527_010--Hb_012305_030 Hb_008568_020 Hb_008568_020 Hb_000527_010--Hb_008568_020 Hb_004976_010 Hb_004976_010 Hb_000527_010--Hb_004976_010 Hb_055235_020 Hb_055235_020 Hb_000527_010--Hb_055235_020 Hb_004020_040 Hb_004020_040 Hb_000527_010--Hb_004020_040 Hb_140049_040 Hb_140049_040 Hb_000527_010--Hb_140049_040 Hb_002085_030 Hb_002085_030 Hb_012305_030--Hb_002085_030 Hb_012305_030--Hb_140049_040 Hb_012305_030--Hb_004976_010 Hb_004236_050 Hb_004236_050 Hb_012305_030--Hb_004236_050 Hb_000914_120 Hb_000914_120 Hb_012305_030--Hb_000914_120 Hb_012194_030 Hb_012194_030 Hb_012305_030--Hb_012194_030 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001673_050 Hb_001673_050 Hb_004976_010--Hb_001673_050 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050 Hb_000318_120 Hb_000318_120 Hb_055235_020--Hb_000318_120 Hb_011972_020 Hb_011972_020 Hb_055235_020--Hb_011972_020 Hb_055235_020--Hb_007044_110 Hb_055235_020--Hb_001636_050 Hb_000457_230 Hb_000457_230 Hb_055235_020--Hb_000457_230 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_001377_310 Hb_001377_310 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8931 11.5033 9.41345 9.77728 10.6366 9.63938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33758 7.14455 3.64147 6.75314 9.39714

CAGE analysis