Hb_000527_060

Information

Type -
Description -
Location Contig527: 59429-71337
Sequence    

Annotation

kegg
ID rcu:RCOM_1062430
description Protein C20orf11, putative
nr
ID XP_002521405.1
description Protein C20orf11, putative [Ricinus communis]
swissprot
ID Q54X16
description Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2
trembl
ID B9S5Y6
description Protein C20orf11, putative OS=Ricinus communis GN=RCOM_1062430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47032: 63754-64005 , PASA_asmbl_47033: 64495-65659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_060 0.0 - - Protein C20orf11, putative [Ricinus communis]
2 Hb_012286_030 0.0504464924 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
3 Hb_001123_130 0.0505982766 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000261_140 0.0687888831 - - -
5 Hb_000115_220 0.0691779869 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
6 Hb_004143_150 0.0701549873 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
7 Hb_000920_110 0.071482793 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
8 Hb_000656_240 0.0726897818 - - proteasome subunit alpha type, putative [Ricinus communis]
9 Hb_004102_110 0.0736562487 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
10 Hb_000580_090 0.0742740247 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
11 Hb_002995_020 0.0753392309 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
12 Hb_003992_270 0.0757302435 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
13 Hb_000667_070 0.0760618163 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_004109_170 0.0766250527 - - PREDICTED: probable ribokinase [Jatropha curcas]
15 Hb_001341_090 0.0769517654 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
16 Hb_004116_190 0.0775996601 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
17 Hb_000676_180 0.0777659458 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
18 Hb_004108_070 0.0780140597 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
19 Hb_001195_480 0.0782831425 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_001484_070 0.0790472485 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000527_060 Hb_000527_060 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000261_140 Hb_000261_140 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_000261_140--Hb_000920_110 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_000261_140--Hb_004143_150 Hb_000193_110 Hb_000193_110 Hb_000115_220--Hb_000193_110 Hb_000115_220--Hb_010175_040 Hb_000115_220--Hb_000261_140 Hb_000035_370 Hb_000035_370 Hb_000115_220--Hb_000035_370 Hb_003992_270 Hb_003992_270 Hb_000115_220--Hb_003992_270 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_000920_110--Hb_001484_070 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2199 15.7625 24.9257 21.404 22.5645 17.6138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0886 55.6586 30.4843 14.6338 13.5598

CAGE analysis