Hb_000527_090

Information

Type -
Description -
Location Contig527: 103140-106945
Sequence    

Annotation

kegg
ID rcu:RCOM_1062290
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002521402.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID O04084
description Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=2
trembl
ID B9S5Y3
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1062290 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47041: 103341-104927 , PASA_asmbl_47042: 105374-105701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_090 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_006452_080 0.0487868563 - - Nodulin, putative [Ricinus communis]
3 Hb_137821_010 0.0573484772 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
4 Hb_003747_080 0.0708632243 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_007441_320 0.0785016511 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
6 Hb_007472_060 0.0797293573 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
7 Hb_000048_120 0.0802645636 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
8 Hb_125152_010 0.0803870165 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_000629_140 0.0818055522 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
10 Hb_011689_090 0.0839992179 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
11 Hb_005463_120 0.0863998032 - - gibberellin 20-oxidase, putative [Ricinus communis]
12 Hb_029508_050 0.0890486091 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
13 Hb_009501_010 0.0923080627 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_003090_250 0.0946526045 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
15 Hb_006275_080 0.094874014 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_116679_010 0.0950106755 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
17 Hb_002217_480 0.0950261085 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
18 Hb_041067_010 0.0985424565 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
19 Hb_000203_110 0.0998855552 - - -
20 Hb_001998_160 0.1038883899 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000527_090 Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_000527_090--Hb_006452_080 Hb_137821_010 Hb_137821_010 Hb_000527_090--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_000527_090--Hb_003747_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000048_120 Hb_000048_120 Hb_000527_090--Hb_000048_120 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006452_080--Hb_116679_010 Hb_137821_010--Hb_003747_080 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_137821_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_137821_010--Hb_125152_010 Hb_000629_140 Hb_000629_140 Hb_137821_010--Hb_000629_140 Hb_000203_110 Hb_000203_110 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_103942_020 Hb_103942_020 Hb_007441_320--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_007441_320--Hb_001454_030 Hb_003607_040 Hb_003607_040 Hb_007441_320--Hb_003607_040 Hb_007441_320--Hb_120496_010 Hb_007441_320--Hb_006452_080 Hb_007472_060--Hb_011689_090 Hb_029508_050 Hb_029508_050 Hb_007472_060--Hb_029508_050 Hb_007472_060--Hb_116679_010 Hb_007472_060--Hb_006452_080 Hb_007472_060--Hb_003607_040 Hb_000048_120--Hb_125152_010 Hb_000048_120--Hb_000629_140 Hb_009501_010 Hb_009501_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_002217_480 Hb_002217_480 Hb_000048_120--Hb_002217_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.695249 0.0835212 9.82682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0522096

CAGE analysis