Hb_000527_120

Information

Type -
Description -
Location Contig527: 144104-152880
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID CAN75041.1
description hypothetical protein VITISV_027174 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0000166
description gag-pol partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_120 0.0 - - hypothetical protein VITISV_027174 [Vitis vinifera]
2 Hb_000173_110 0.1227570633 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
3 Hb_142522_040 0.144357197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001366_260 0.1450017627 - - T4.15 [Malus x robusta]
5 Hb_000820_100 0.1456999504 - - RNA-directed DNA polymerase [Arachis hypogaea]
6 Hb_009434_060 0.1495977901 - - T4.15 [Malus x robusta]
7 Hb_007543_020 0.1519751725 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
8 Hb_001946_130 0.1531373141 - - -
9 Hb_116784_020 0.1586571551 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
10 Hb_011472_050 0.1603619983 - - -
11 Hb_010565_030 0.1620999795 - - hypothetical protein VITISV_006810 [Vitis vinifera]
12 Hb_005542_010 0.1704428997 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
13 Hb_000123_340 0.1716434824 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
14 Hb_000732_180 0.174378735 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
15 Hb_001514_150 0.1757117778 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_000352_060 0.1769185069 - - RNA-directed DNA polymerase [Arachis hypogaea]
17 Hb_003913_040 0.1786292622 - - ferric reductase oxidase [Manihot esculenta]
18 Hb_002013_030 0.1809668026 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
19 Hb_002110_110 0.1809917877 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
20 Hb_005092_090 0.1826487764 - - cold regulated protein [Manihot esculenta]

Gene co-expression network

sample Hb_000527_120 Hb_000527_120 Hb_000173_110 Hb_000173_110 Hb_000527_120--Hb_000173_110 Hb_142522_040 Hb_142522_040 Hb_000527_120--Hb_142522_040 Hb_001366_260 Hb_001366_260 Hb_000527_120--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000527_120--Hb_000820_100 Hb_009434_060 Hb_009434_060 Hb_000527_120--Hb_009434_060 Hb_007543_020 Hb_007543_020 Hb_000527_120--Hb_007543_020 Hb_000123_340 Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_001366_260 Hb_000173_110--Hb_000820_100 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050 Hb_000732_180 Hb_000732_180 Hb_142522_040--Hb_000732_180 Hb_142522_040--Hb_116784_020 Hb_142522_040--Hb_000820_100 Hb_142522_040--Hb_001366_260 Hb_142522_040--Hb_007543_020 Hb_142522_040--Hb_000173_110 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_009434_060--Hb_001366_260 Hb_009434_060--Hb_000820_100 Hb_009434_060--Hb_007543_020 Hb_009434_060--Hb_011472_050 Hb_009434_060--Hb_116784_020 Hb_009434_060--Hb_000173_110 Hb_007543_020--Hb_116784_020 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00571888 0.083762 0.0521035 0.0121216 0.00572338 0.00526492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0129627 0 0 0.0606538 0.218047

CAGE analysis